OCA Atlas for 3IFO

3IFO

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Primary reference

Structural correlates of antibodies associated with acute reversal of A-beta related behavioral deficits in a mouse model of Alzheimer's disease., Basi GS, Feinberg H, Oshidari F, Anderson J, Barbour R, Baker J, Comery TA, Diep L, Gill D, Johnson-Wood K, Goel A, Grantcharova K, Lee M, Li J, Partridge A, Griswold-Prenner I, Piot N, Walker D, Widom A, Pangalos MN, Seubert P, Jacobsen JS, Schenk D, Weis WI, J Biol Chem. 2009 Nov 18. PMID:19923222

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (297 Kb) [Save to disk]

Biological Unit Coordinates (3ifo.pdb1.gz) 147 Kb

Biological Unit Coordinates (3ifo.pdb2.gz) 148 Kb

CSU: Contacts of Structural Units for 3IFO

Structure Factors (399 Kb)

Retrieve 3IFO in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3IFO from S2C, [Save to disk]

Re-refined 3ifo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3IFO in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ifo] [3ifo_A] [3ifo_B] [3ifo_H] [3ifo_L] [3ifo_P] [3ifo_Q]

SWISS-PROT database: [P05067]

Belongs to the amyloid β-protein peptide (aβpp) family

according to TCDB.

Domains found in 3IFO: [IG_like] [IGv ] by SMART

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