3IHP	Hydrolase	date	Jul 30, 2009
title	Covalent Ubiquitin-Usp5 Complex
authors	J.R.Walker, G.V.Avvakumov, S.Xue, C.Butler-Cole, J.Weigelt, C.Bou C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, S.Dhe-Paganon, Struct Genomics Consortium (Sgc)
compound		source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 5 Chain: A, B Synonym: Ubiquitin Thioesterase 5, Ubiquitin-Specific-Proce Protease 5, Deubiquitinating Enzyme 5, Isopeptidase T; Ec: 3.1.2.15 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Isot, Usp5 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a-Lic
Molecule: Ubiquitin Chain: C, D Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rps27a, Uba52, Uba80, Ubb, Ubc, Ubcep1, Ubcep2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: B21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Ptby2
symmetry	Space Group: P 21 21 21	R_factor 0.224 R_Free 0.276
crystal cell	length a length b length c angle alpha angle beta angle gamma 68.295 188.845 207.860 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	CL, NEH, ZN	enzyme	Hydrolase E.C.3.1.2.15 BRENDA
Gene Ontology	Chain Function Process Component A, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (408 Kb) [Save to disk] Biological Unit Coordinates (3ihp.pdb1.gz) 200 Kb Biological Unit Coordinates (3ihp.pdb2.gz) 201 Kb LPC: Ligand-Protein Contacts for 3IHP CSU: Contacts of Structural Units for 3IHP Structure Factors (1074 Kb) Retrieve 3IHP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3IHP from S2C, [Save to disk] Re-refined 3ihp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3IHP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3IHP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3IHP, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ihp_D] [3ihp_B] [3ihp_C] [3ihp_A] [3ihp] SWISS-PROT database: [P62988] [P45974] Domain organization of [UBIQ_HUMAN] [UBP5_HUMAN] by SWISSPFAM Domains found in 3IHP: [UBA] [UBQ] [ZnF_UBP ] by SMART

Other resources with information on 3IHP

Community annotation for 3IHP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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