3II3 Dna Binding Protein date Jul 31, 2009
title Structure Of Orf157 From Acidianus Filamentous Virus 1
authors A.Goulet, P.Redder, M.Pina, D.Prangishvili, H.Van Tilbeurgh, C.Ca V.Campanacci
compound source
Molecule: Putative Uncharacterized Protein
Chain: A
Synonym: Orf157
Engineered: Yes
 Organism_scientific: Acidianus Filamentous Virus 1
Organism_common: Afv-1
Organism_taxid: 235266
Gene: Afv1 Orf157
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest17
symmetry Space Group: P 31 2 1
R_factor 0.270 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.445 65.445 85.604 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand GOL, NI enzyme
Primary referenceORF 157 from the Archaeal Virus AFV1 Defines a New Class of Nuclease., Goulet A, Redder P, Pina M, Prangishvili D, Vera L, Lichiere J, Leulliot N, van Tilbeurgh H, Ortiz-Lombardia M, Campanacci V, Cambillau C, J Virol. 2010 Mar 3. PMID:20200253
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (3ii3.pdb1.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 3II3
  • CSU: Contacts of Structural Units for 3II3
  • Structure Factors (321 Kb)
  • Retrieve 3II3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3II3 from S2C, [Save to disk]
  • Re-refined 3ii3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3II3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3II3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3II3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ii3] [3ii3_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3II3
  • Community annotation for 3II3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science