3IIM Protein Binding, Transferase date Aug 02, 2009
title The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms Resolu
authors S.E.Zographos, C.E.Drakou, D.D.Leonidas
compound source
Molecule: Coilin-Interacting Nuclear Atpase Protein
Chain: A
Synonym: Coilin-Interacting Nulcear Atpase Protein, Taf9 Rn Polymerase II, Tata Box Binding Protein (Tbp)-Associated Fa 32kda, Isoform Cra_b, Human Adenylate Kinase 6;
Ec: 2.7.4.3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cinap, Taf9, Hcg_37060
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-3
symmetry Space Group: P 61
R_factor 0.174 R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.276 99.276 57.969 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand DAT, DTV, EPE, SO4 enzyme Transferase E.C.2.7.4.3 BRENDA
Gene HCG
Gene
Ontology
ChainFunctionProcessComponent
A
  • adenylate kinase activity
  • nucleoside phosphate kinase ...


  • Primary referencehCINAP is an atypical mammalian nuclear adenylate kinase with an ATPase motif: Structural and functional studies., Drakou CE, Malekkou A, Hayes JM, Lederer CW, Leonidas DD, Oikonomakos NG, Lamond AI, Santama N, Zographos SE, Proteins. 2011 Sep 14. doi: 10.1002/prot.23186. PMID:22038794
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (3iim.pdb1.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 3IIM
  • CSU: Contacts of Structural Units for 3IIM
  • Structure Factors (377 Kb)
  • Retrieve 3IIM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IIM from S2C, [Save to disk]
  • Re-refined 3iim structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3IIM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3IIM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3IIM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3iim_A] [3iim]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3IIM
  • Community annotation for 3IIM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Adenylate Kinase (the movie)
  • Images from IMB Jena Image Library of Biological Macromolecules.

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