3IIO Lyase date Aug 03, 2009
title Evolutionary Optimization Of Computationally Designed Enzyme Eliminases Of The Ke07 Series
authors O.Khersonsky, O.Dym, D.S.Tawfik
compound source
Molecule: Ke07
Chain: A, B, C, D, E, F
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31
R_factor 0.215 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
106.584 106.584 128.753 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.25 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceEvolutionary optimization of computationally designed enzymes: Kemp eliminases of the KE07 series., Khersonsky O, Rothlisberger D, Dym O, Albeck S, Jackson CJ, Baker D, Tawfik DS, J Mol Biol. 2010 Mar 5;396(4):1025-42. Epub 2009 Dec 28. PMID:20036254
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (237 Kb) [Save to disk]
  • Biological Unit Coordinates (3iio.pdb1.gz) 41 Kb
  • Biological Unit Coordinates (3iio.pdb2.gz) 42 Kb
  • Biological Unit Coordinates (3iio.pdb3.gz) 42 Kb
  • Biological Unit Coordinates (3iio.pdb4.gz) 42 Kb
  • Biological Unit Coordinates (3iio.pdb5.gz) 41 Kb
  • Biological Unit Coordinates (3iio.pdb6.gz) 41 Kb
  • CSU: Contacts of Structural Units for 3IIO
  • Structure Factors (1177 Kb)
  • Retrieve 3IIO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IIO from S2C, [Save to disk]
  • Re-refined 3iio structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3IIO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3IIO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3IIO, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3iio_D] [3iio_F] [3iio_B] [3iio_A] [3iio] [3iio_C] [3iio_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3IIO
  • Community annotation for 3IIO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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