3IJE	Protein Binding	date	Aug 04, 2009
title	Crystal Structure Of The Complete Integrin Alhavbeta3 Ectodo An Alphabeta Transmembrane Fragment
authors	J.P.Xiong, B.Mahalingham, X.Rui, B.T.Hyman, S.L.Goodman, M.A.Arn
compound		source
Molecule: Integrin Alpha-V Chain: A Synonym: Vitronectin Receptor Subunit Alpha, Integrin Alpha Chain, Integrin Alpha-V Light Chain; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Alphav Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_strain: Hi-5 Expression_system_vector_type: Pacuw31 Expression_system_plasmid: 1tm-Avb3 Pacuw31
Molecule: Integrin Beta-3 Chain: B Synonym: Platelet Membrane Glycoprotein Iiia, Gpiiia Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Itgb3, Gp3a Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_strain: Hi-5
symmetry	Space Group: P 32 2 1	R_factor 0.244 R_Free 0.285
crystal cell	length a length b length c angle alpha angle beta angle gamma 129.870 129.870 305.900 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	BMA, CA, MAN, NAG	enzyme
Gene Ontology	Chain Function Process Component A B smooth muscle cell migration...
Primary reference	Crystal structure of the complete integrin alphaVbeta3 ectodomain plus an alpha/beta transmembrane fragment., Xiong JP, Mahalingham B, Alonso JL, Borrelli LA, Rui X, Anand S, Hyman BT, Rysiok T, Muller-Pompalla D, Goodman SL, Arnaout MA, J Cell Biol. 2009 Aug 24;186(4):589-600. PMID:19704023

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (266 Kb) [Save to disk] Biological Unit Coordinates (3ije.pdb1.gz) 254 Kb LPC: Ligand-Protein Contacts for 3IJE CSU: Contacts of Structural Units for 3IJE Structure Factors (470 Kb) Retrieve 3IJE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3IJE from S2C, [Save to disk] Re-refined 3ije structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3IJE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3IJE

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3IJE, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ije_A] [3ije] [3ije_B] SWISS-PROT database: [P06756] [P05106] Belongs to the integrin (integrin) family according to TCDB. Domain organization of [ITAV_HUMAN] [ITB3_HUMAN] by SWISSPFAM Domains found in 3IJE: [INB] [Int_alpha] [Integrin_B_tail] [PSI] [VWA ] by SMART

Other resources with information on 3IJE

Community annotation for 3IJE at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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