3IJM Structural Genomics, Unknown Function date Aug 04, 2009
title The Structure Of A Restriction Endonuclease-Like Fold Superf Protein From Spirosoma Linguale.
authors M.E.Cuff, C.Tesar, S.Samano, J.Bearden, A.Joachimiak, Midwest Cen Structural Genomics (Mcsg)
compound source
Molecule: Uncharacterized Restriction Endonuclease-Like Fol Superfamily Protein;
Chain: A, B
Engineered: Yes
 Organism_scientific: Spirosoma Linguale
Organism_taxid: 504472
Strain: Dsm 74
Gene: Duf820, Slindraft_22400
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg19
symmetry Space Group: P 21 21 21
R_factor 0.166 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.770 65.849 68.917 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand GOL, MSE, NA, SO4 enzyme
note 3IJM is a representative structure
Gene SLINDRAFT
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (3ijm.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 3IJM
  • CSU: Contacts of Structural Units for 3IJM
  • Structure Factors (958 Kb)
  • Retrieve 3IJM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IJM from S2C, [Save to disk]
  • Re-refined 3ijm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3IJM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3IJM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3IJM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ijm] [3ijm_A] [3ijm_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3IJM
  • Community annotation for 3IJM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science