3IKK Crystal structure analysis of msp domain date
authors Shi, J., Lua, S., Song, J.
compound source
symmetry
R_factor
R_Free 0.2655
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
note 3IKK is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceElimination of the native structure and solubility of the hVAPB MSP domain by the Pro56Ser mutation that causes amyotrophic lateral sclerosis., Shi J, Lua S, Tong JS, Song J, Biochemistry. 2010 May 11;49(18):3887-97. PMID:20377183
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (3ikk.pdb1.gz) 43 Kb
  • CSU: Contacts of Structural Units for 3IKK
  • Structure Factors (70 Kb)
  • Retrieve 3IKK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IKK from S2C, [Save to disk]
  • Re-refined 3ikk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3IKK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3IKK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3IKK, from MSDmotif at EBI
  • Fold representative 3ikk from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ikk_B] [3ikk] [3ikk_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3IKK
  • Community annotation for 3IKK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science