3ILQ	Immune System	date	Aug 07, 2009
title	Structure Of Mcd1d With Bound Glycolipid Bbgl-2c From Borrel Burgdorferi
authors	D.M.Zajonc
compound		source
Molecule: T-Cell Surface Glycoprotein Cd1d1 Chain: C Fragment: Unp Residues 19-298 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Cd1.1, Cd1d, Cd1d1 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_strain: Sf9 Expression_system_vector_type: Dual Promotor Baculovirus Tr Vector; Expression_system_plasmid: Pbacphp10
Molecule: Beta-2 Microglobulin Chain: D Fragment: Unp Residues 21-119 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: B2m, Beta 2 Microblobulin, Mcg_11606, Rp23-34e24.5-00 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_strain: Sf9 Expression_system_vector_type: Dual Promotor Baculovirus Tr Vector; Expression_system_plasmid: Pbacphp10
symmetry	Space Group: P 1 21 1	R_factor 0.208 R_Free 0.251
crystal cell	length a length b length c angle alpha angle beta angle gamma 41.706 97.791 55.421 90.00 106.94 90.00
method	X-Ray Diffraction	resolution	2.05 Å
ligand	1O2, NAG	enzyme
Gene	MCG
Gene Ontology	Chain Function Process Component D
Primary reference	Lipid binding orientation within CD1d affects recognition of Borrelia burgorferi antigens by NKT cells., Wang J, Li Y, Kinjo Y, Mac TT, Gibson D, Painter GF, Kronenberg M, Zajonc DM, Proc Natl Acad Sci U S A. 2009 Dec 30. PMID:20080535

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk] Biological Unit Coordinates (3ilq.pdb1.gz) 130 Kb LPC: Ligand-Protein Contacts for 3ILQ CSU: Contacts of Structural Units for 3ILQ Structure Factors (336 Kb) Retrieve 3ILQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3ILQ from S2C, [Save to disk] Re-refined 3ilq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3ILQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3ILQ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3ILQ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ilq_D] [3ilq] [3ilq_C] SWISS-PROT database: [P11609] Domain organization of [CD1D1_MOUSE] by SWISSPFAM Domain found in 3ILQ: [IGc1 ] by SMART

Other resources with information on 3ILQ

Community annotation for 3ILQ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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