3INB Viral Protein Immune System date Aug 12, 2009
title Structure Of The Measles Virus Hemagglutinin Bound To The Cd Receptor
authors C.Santiago, M.L.Celma, T.Stehle, J.M.Casasnovas
compound source
Molecule: Hemagglutinin Glycoprotein
Chain: A, B
Fragment: Head Domain, Residues 179-617
Engineered: Yes
Organism_scientific: Measles Virus Strain Edmonston
Organism_common: Viruses
Organism_taxid: 11235
Strain: Edmonston
Gene: H
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_strain: Cho-Lec 3281
Expression_system_cell_line: Ovary Cells
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbj5-Gs

Molecule: Membrane Cofactor Protein
Chain: C, D
Fragment: Sushi Domains 1 And 2, Residues 35-160
Synonym: Trophoblast Leukocyte Common Antigen, Tlx
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cd46, Mcp, Mic10
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_strain: Cho-Lec 3281
Expression_system_cell_line: Ovary Cells
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbj5-Gs
symmetry Space Group: P 2 2 21
R_factor 0.227 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.365 105.833 208.710 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
ligand NAG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of the measles virus hemagglutinin bound to the CD46 receptor., Santiago C, Celma ML, Stehle T, Casasnovas JM, Nat Struct Mol Biol. 2010 Jan;17(1):124-9. Epub 2009 Dec 13. PMID:20010840
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (368 Kb) [Save to disk]
  • Biological Unit Coordinates (3inb.pdb1.gz) 360 Kb
  • LPC: Ligand-Protein Contacts for 3INB
  • CSU: Contacts of Structural Units for 3INB
  • Structure Factors (656 Kb)
  • Retrieve 3INB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3INB from S2C, [Save to disk]
  • Re-refined 3inb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3INB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3INB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3INB, from MSDmotif at EBI
  • Fold representative 3inb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3inb] [3inb_D] [3inb_A] [3inb_B] [3inb_C]
  • SWISS-PROT database: [P08362] [P15529]
  • Domain organization of [HEMA_MEASE] [MCP_HUMAN] by SWISSPFAM
  • Domain found in 3INB: [CCP ] by SMART
  • Other resources with information on 3INB
  • Community annotation for 3INB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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