3INJ Oxidoreductase date Aug 12, 2009
title Human Mitochondrial Aldehyde Dehydrogenase Complexed With Ag Alda-1
authors S.Perez-Miller, T.D.Hurley
compound source
Molecule: Aldehyde Dehydrogenase, Mitochondrial
Chain: A, B, C, D, E, F, G, H
Synonym: Aldh Class 2, Aldhi, Aldh-E2
Ec: 1.2.1.3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aldh2, Aldm
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt-7-7
symmetry Space Group: P 1 21 1
R_factor 0.179 R_Free 0.200
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.916 176.839 102.464 90.00 94.52 90.00
method X-Ray Diffractionresolution 1.69 Å
ligand BXB, EDO, GAI, NA enzyme Oxidoreductase E.C.1.2.1.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceAlda-1 is an agonist and chemical chaperone for the common human aldehyde dehydrogenase 2 variant., Perez-Miller S, Younus H, Vanam R, Chen CH, Mochly-Rosen D, Hurley TD, Nat Struct Mol Biol. 2010 Feb;17(2):159-64. Epub 2010 Jan 10. PMID:20062057
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (701 Kb) [Save to disk]
  • Biological Unit Coordinates (3inj.pdb1.gz) 352 Kb
  • Biological Unit Coordinates (3inj.pdb2.gz) 350 Kb
  • LPC: Ligand-Protein Contacts for 3INJ
  • CSU: Contacts of Structural Units for 3INJ
  • Structure Factors (7843 Kb)
  • Retrieve 3INJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3INJ from S2C, [Save to disk]
  • Re-refined 3inj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3INJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3INJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3INJ, from MSDmotif at EBI
  • Fold representative 3inj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3inj_G] [3inj_A] [3inj_H] [3inj_F] [3inj_C] [3inj_D] [3inj_E] [3inj_B] [3inj]
  • SWISS-PROT database: [P05091]
  • Domain organization of [ALDH2_HUMAN] by SWISSPFAM
  • Other resources with information on 3INJ
  • Community annotation for 3INJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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