3INJ	Oxidoreductase	date	Aug 12, 2009
title	Human Mitochondrial Aldehyde Dehydrogenase Complexed With Ag Alda-1
authors	S.Perez-Miller, T.D.Hurley
compound		source
Molecule: Aldehyde Dehydrogenase, Mitochondrial Chain: A, B, C, D, E, F, G, H Synonym: Aldh Class 2, Aldhi, Aldh-E2 Ec: 1.2.1.3 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Aldh2, Aldm Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pt-7-7
symmetry	Space Group: P 1 21 1	R_factor 0.179 R_Free 0.200
crystal cell	length a length b length c angle alpha angle beta angle gamma 101.916 176.839 102.464 90.00 94.52 90.00
method	X-Ray Diffraction	resolution	1.69 Å
ligand	BXB, EDO, GAI, NA	enzyme	Oxidoreductase E.C.1.2.1.3 BRENDA
Gene Ontology	Chain Function Process Component F, A, E, B, H, C, D, G aldehyde dehydrogenase (NAD)... aldehyde dehydrogenase [NAD(... electron carrier activity oxidoreductase activity carbohydrate metabolic proce... alcohol metabolic process ethanol catabolic process ethanol oxidation xenobiotic metabolic process... synaptic transmission neurotransmitter biosyntheti... small molecule metabolic pro... oxidation-reduction process mitochondrion mitochondrial matrix
Primary reference	Alda-1 is an agonist and chemical chaperone for the common human aldehyde dehydrogenase 2 variant., Perez-Miller S, Younus H, Vanam R, Chen CH, Mochly-Rosen D, Hurley TD, Nat Struct Mol Biol. 2010 Feb;17(2):159-64. Epub 2010 Jan 10. PMID:20062057

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (701 Kb) [Save to disk] Biological Unit Coordinates (3inj.pdb1.gz) 352 Kb Biological Unit Coordinates (3inj.pdb2.gz) 350 Kb LPC: Ligand-Protein Contacts for 3INJ CSU: Contacts of Structural Units for 3INJ Structure Factors (7809 Kb) Retrieve 3INJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3INJ from S2C, [Save to disk] Re-refined 3inj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3INJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 3INJ

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 3INJ, from MSDmotif at EBI Fold representative 3inj from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3inj_A] [3inj_B] [3inj_C] [3inj_D] [3inj_E] [3inj_F] [3inj_G] [3inj_H] SWISS-PROT database: [P05091] Domain organization of [ALDH2_HUMAN] by SWISSPFAM Alignments of the sequence of 3INJ with the sequences similar proteins can be viewed for 3INJ's classification [ALDH2_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ALDH2_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 3INJ

Community annotation for 3INJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2010 Bioinformatics Unit Weizmann Institute of Science

---