3INX Chaperone date Aug 13, 2009
title Hsp90 N-Terminal Domain With Pochoxime B
authors I.P.Korndoerfer
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: A
Fragment: Unp Residues 10-236, N-Terminal Domain
Ec: 3.6.4.10
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hsp90aa1, Hsp90a, Hspc1, Hspca
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 2 2 2
R_factor 0.168 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.200 89.618 98.385 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand DMS, JZC enzyme Hydrolase E.C.3.6.4.10 BRENDA
Primary referenceInhibition of HSP90 with pochoximes: SAR and structure-based insights., Barluenga S, Fontaine JG, Wang C, Aouadi K, Chen R, Beebe K, Neckers L, Winssinger N, Chembiochem. 2009 Nov 23;10(17):2753-9. PMID:19856365
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (3inx.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 3INX
  • CSU: Contacts of Structural Units for 3INX
  • Structure Factors (456 Kb)
  • Retrieve 3INX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3INX from S2C, [Save to disk]
  • Re-refined 3inx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3INX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3INX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3INX, from MSDmotif at EBI
  • Fold representative 3inx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3inx_A] [3inx]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3INX: [HATPase_c ] by SMART
  • Other resources with information on 3INX
  • Community annotation for 3INX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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