3INX Chaperone date Aug 13, 2009
title Hsp90 N-Terminal Domain With Pochoxime B
authors I.P.Korndoerfer
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: A
Fragment: Unp Residues 10-236, N-Terminal Domain
Ec: 3.6.4.10
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hsp90aa1, Hsp90a, Hspc1, Hspca
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 2 2 2
R_factor 0.168 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.200 89.618 98.385 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand DMS, JZC enzyme Hydrolase E.C.3.6.4.10 BRENDA
Primary referenceInhibition of HSP90 with pochoximes: SAR and structure-based insights., Barluenga S, Fontaine JG, Wang C, Aouadi K, Chen R, Beebe K, Neckers L, Winssinger N, Chembiochem. 2009 Nov 23;10(17):2753-9. PMID:19856365
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (3inx.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 3INX
  • CSU: Contacts of Structural Units for 3INX
  • Structure Factors (456 Kb)
  • Retrieve 3INX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3INX from S2C, [Save to disk]
  • Re-refined 3inx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3INX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3INX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3INX, from MSDmotif at EBI
  • Fold representative 3inx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3inx_A] [3inx]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3INX: [HATPase_c ] by SMART
  • Alignments of the sequence of 3INX with the sequences similar proteins can be viewed for 3INX's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3INX
  • Community annotation for 3INX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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