3IO0 Structural Protein date Aug 13, 2009
title Crystal Structure Of Etub From Clostridium Kluyveri
authors R.W.Pickersgill, M.J.Warren
compound source
Molecule: Etub Protein
Chain: A
Fragment: Unp Residues 75-304
Synonym: Predicted Microcompartment Protein
Engineered: Yes
Organism_scientific: Clostridium Kluyveri Dsm 555
Organism_taxid: 431943
Strain: Atcc8527, Dsm555, Ncimb 10680
Gene: 1073
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3) Plyss
Expression_system_plasmid: Pet14b
symmetry Space Group: I 21 3
R_factor 0.188 R_Free 0.203
crystal
cell
length a length b length c angle alpha angle beta angle gamma
173.410 173.410 173.410 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of a trimeric bacterial microcompartment shell protein, EtuB, associated with ethanol utilisation in Clostridium kluyveri., Heldt D, Frank S, Seyedarabi A, Ladakis D, Parsons JB, Warren MJ, Pickersgill RW, Biochem J. 2009 Jul 28. PMID:19635047
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (3io0.pdb1.gz) 96 Kb
  • CSU: Contacts of Structural Units for 3IO0
  • Structure Factors (963 Kb)
  • Retrieve 3IO0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IO0 from S2C, [Save to disk]
  • Re-refined 3io0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3IO0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3IO0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3IO0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3io0] [3io0_A]
  • SWISS-PROT database: [A5N734]
  • Domain organization of [A5N734_CLOK5] by SWISSPFAM
  • Domain found in 3IO0: [BMC ] by SMART
  • Other resources with information on 3IO0
  • Community annotation for 3IO0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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