3IO1 Hydrolase date Aug 13, 2009
title Crystal Structure Of Aminobenzoyl-Glutamate Utilization Prot Klebsiella Pneumoniae
authors D.Kumaran, K.Baumann, S.K.Burley, S.Swaminathan, New York Sgx Re Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Aminobenzoyl-Glutamate Utilization Protein
Chain: A, B
Engineered: Yes
 Organism_scientific: Klebsiella Pneumoniae Subsp. Pneumonia 78578;
Organism_taxid: 272620
Strain: Strain Atcc 700721 Mgh 78578
Gene: Abga, Kpn78578_15040, Kpn_01534
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psgx3(Bc)
symmetry Space Group: P 21 21 2
R_factor 0.224 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
183.390 48.519 107.998 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand MSE, NA, YT3 enzyme
Gene KPN78578 ; KPN
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk]
  • Biological Unit Coordinates (3io1.pdb1.gz) 238 Kb
  • LPC: Ligand-Protein Contacts for 3IO1
  • CSU: Contacts of Structural Units for 3IO1
  • Structure Factors (237 Kb)
  • Retrieve 3IO1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IO1 from S2C, [Save to disk]
  • Re-refined 3io1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3IO1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3IO1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3IO1, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3io1_B] [3io1] [3io1_A]
  • SWISS-PROT database: [A6T8P4]
  • Domain organization of [A6T8P4_KLEP7] by SWISSPFAM
    • Other resources with information on 3IO1
  • Community annotation for 3IO1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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