3IO8	Apoptosis	date	Aug 14, 2009
title	Biml12f In Complex With Bcl-Xl
authors	P.M.Colman, E.F.Lee, W.D.Fairlie, B.J.Smith, P.E.Czabotar, H.Yang B.E.Sleebs, G.Lessene
compound		source
Molecule: Bcl-2-Like Protein 1 Chain: A, C Fragment: Residues 1-26, And Residues 83-209 Synonym: Bcl2-L-1, Apoptosis Regulator Bcl-X Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Bcl2l1, Bcl2l, Bclx Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex
Molecule: Bcl-2-Like Protein 11 Chain: B, D Fragment: Bh3 Peptide, Residues 141-166 Synonym: Bcl2-L-11, Bcl2-Interacting Mediator Of Cell Death Engineered: Yes Mutation: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: Synthetic Peptide
symmetry	Space Group: P 62	R_factor 0.185 R_Free 0.231
crystal cell	length a length b length c angle alpha angle beta angle gamma 65.717 65.717 170.094 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	ZN	enzyme
Gene Ontology	Chain Function Process Component A, C
Primary reference	Conformational changes in Bcl-2 pro-survival proteins determine their capacity to bind ligands., Lee EF, Czabotar PE, Yang H, Sleebs BE, Lessene G, Colman PM, Smith BJ, Fairlie WD, J Biol Chem. 2009 Oct 30;284(44):30508-17. Epub 2009 Sep 2. PMID:19726685

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk] Biological Unit Coordinates (3io8.pdb1.gz) 28 Kb Biological Unit Coordinates (3io8.pdb2.gz) 28 Kb LPC: Ligand-Protein Contacts for 3IO8 CSU: Contacts of Structural Units for 3IO8 Structure Factors (131 Kb) Retrieve 3IO8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3IO8 from S2C, [Save to disk] Re-refined 3io8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3IO8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3IO8

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3IO8, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3io8] [3io8_C] [3io8_B] [3io8_A] [3io8_D] SWISS-PROT database: [Q07817] [O43521] Belongs to the bcl-2 (bcl-2) family according to TCDB. Belongs to the pro-apoptotic bcl-2-family protein bim (bim) family according to TCDB. Domain organization of [B2CL1_HUMAN] [B2L11_HUMAN] by SWISSPFAM Domains found in 3IO8: [BCL] [BH4 ] by SMART

Other resources with information on 3IO8

Community annotation for 3IO8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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