3IO9	Apoptosis	date	Aug 14, 2009
title	Biml12y In Complex With Mcl-1
authors	P.E.Czabotar, E.F.Lee, H.Yang, B.E.Sleebs, G.Lessene, P.M.Colman, B.J.Smith, W.D.Fairlie
compound		source
Molecule: Induced Myeloid Leukemia Cell Differentiation Pro 1; Chain: A Fragment: Fusion Protein Of Mouse Mcl-1 Residues 152-189 An Mcl-1 Residues 209-327; Synonym: Bcl-2-Related Protein Eatmcl1, Mcl1eat, Bcl-2-Li 3, Bcl2-L-3; Engineered: Yes		Organism_scientific: Homo Sapiens, Mus Musculus Organism_common: Human, Mouse Organism_taxid: 9606, 10090 Gene: Mcl1, Bcl2l3, Mcl1 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex6p3
Molecule: Bcl-2-Like Protein 11 Chain: B Fragment: Bh3 Peptide, Residues 141-166 Synonym: Bcl2-L-11, Bcl2-Interacting Mediator Of Cell Death Engineered: Yes Mutation: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: Synthetic Peptide
symmetry	Space Group: I 2 2 2	R_factor 0.209 R_Free 0.251
crystal cell	length a length b length c angle alpha angle beta angle gamma 52.537 74.119 117.541 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	ZN	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Conformational changes in Bcl-2 pro-survival proteins determine their capacity to bind ligands., Lee EF, Czabotar PE, Yang H, Sleebs BE, Lessene G, Colman PM, Smith BJ, Fairlie WD, J Biol Chem. 2009 Oct 30;284(44):30508-17. Epub 2009 Sep 2. PMID:19726685

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk] Biological Unit Coordinates (3io9.pdb1.gz) 29 Kb LPC: Ligand-Protein Contacts for 3IO9 CSU: Contacts of Structural Units for 3IO9 Structure Factors (236 Kb) Retrieve 3IO9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3IO9 from S2C, [Save to disk] Re-refined 3io9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3IO9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3IO9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3IO9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3io9_B] [3io9_A] [3io9] SWISS-PROT database: [O43521] [Q07820] [P97287] Belongs to the pro-apoptotic bcl-2-family protein bim (bim) family according to TCDB. Domain organization of [B2L11_HUMAN] [MCL1_HUMAN] [MCL1_MOUSE] by SWISSPFAM Domain found in 3IO9: [BCL ] by SMART

Other resources with information on 3IO9

Community annotation for 3IO9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---