OCA Atlas for 3IPM

3IPM

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
B, G, D, A, C, F, E
H, J, I, N, M, K, L
T, S, Q, U, R, O, P

Primary reference

Interactions of PAN's C-termini with archaeal 20S proteasome and implications for the eukaryotic proteasome-ATPase interactions., Yu Y, Smith DM, Kim HM, Rodriguez V, Goldberg AL, Cheng Y, EMBO J. 2009 Dec 17. PMID:20019667

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (702 Kb) [Save to disk]

Biological Unit Coordinates (3ipm.pdb1.gz) 1380 Kb

CSU: Contacts of Structural Units for 3IPM

Structure Factors (2841 Kb)

Retrieve 3IPM in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3IPM from S2C, [Save to disk]

Re-refined 3ipm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3IPM in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ipm] [3ipm_A] [3ipm_B] [3ipm_C] [3ipm_D] [3ipm_E] [3ipm_F] [3ipm_G] [3ipm_H] [3ipm_I] [3ipm_J] [3ipm_K] [3ipm_L] [3ipm_M] [3ipm_N] [3ipm_O] [3ipm_P] [3ipm_Q] [3ipm_R] [3ipm_S] [3ipm_T] [3ipm_U]

SWISS-PROT database: [P25156] [P28061] [Q58576] [Q38BM8]

Domain found in 3IPM: [Proteasome_A_N ] by SMART

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