3IT8	Crystal structure of TNF alpha complexed with a poxvirus MHC-related TNF binding protein	date
authors	Yang, Z., West, A.P., Bjorkman, P.J.
compound		source
symmetry		R_factor R_Free 0.2658
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.80
ligand	NAG	enzyme
Gene Ontology	Chain Function Process Component A, B, H, C, I, G F, J, K, E, D, L protein serine/threonine kin...
Primary reference	Crystal structure of TNFalpha complexed with a poxvirus MHC-related TNF binding protein., Yang Z, West AP Jr, Bjorkman PJ, Nat Struct Mol Biol. 2009 Nov;16(11):1189-91. Epub 2009 Oct 18. PMID:19838188

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (428 Kb) [Save to disk] Biological Unit Coordinates (3it8.pdb1.gz) 213 Kb Biological Unit Coordinates (3it8.pdb2.gz) 213 Kb LPC: Ligand-Protein Contacts for 3IT8 CSU: Contacts of Structural Units for 3IT8 Structure Factors (848 Kb) Retrieve 3IT8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3IT8 from S2C, [Save to disk] Re-refined 3it8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3IT8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3IT8

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3IT8, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3it8_D] [3it8_A] [3it8_I] [3it8_H] [3it8_J] [3it8_C] [3it8_E] [3it8_K] [3it8_L] [3it8_G] [3it8] [3it8_B] [3it8_F] SWISS-PROT database: [Q9DHW0] [P01375] Domain organization of [Q9DHW0_YLDV] [TNFA_HUMAN] by SWISSPFAM Domains found in 3IT8: [IG_like] [TNF ] by SMART

Other resources with information on 3IT8

Community annotation for 3IT8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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