3IT8 Crystal structure of TNF alpha complexed with a poxvirus MHC-related TNF binding protein date
authors Yang, Z., West, A.P., Bjorkman, P.J.
compound source
R_Free 0.2658
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand NAG enzyme
A, B, H, C, I, G

F, J, K, E, D, L
  • protein serine/threonine kin...

  • Primary referenceCrystal structure of TNFalpha complexed with a poxvirus MHC-related TNF binding protein., Yang Z, West AP Jr, Bjorkman PJ, Nat Struct Mol Biol. 2009 Nov;16(11):1189-91. Epub 2009 Oct 18. PMID:19838188
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (428 Kb) [Save to disk]
  • Biological Unit Coordinates (3it8.pdb1.gz) 213 Kb
  • Biological Unit Coordinates (3it8.pdb2.gz) 213 Kb
  • LPC: Ligand-Protein Contacts for 3IT8
  • CSU: Contacts of Structural Units for 3IT8
  • Structure Factors (848 Kb)
  • Retrieve 3IT8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IT8 from S2C, [Save to disk]
  • Re-refined 3it8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3IT8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3IT8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3IT8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3it8_D] [3it8_A] [3it8_I] [3it8_H] [3it8_J] [3it8_C] [3it8_E] [3it8_K] [3it8_L] [3it8_G] [3it8] [3it8_B] [3it8_F]
  • SWISS-PROT database: [Q9DHW0] [P01375]
  • Domain organization of [Q9DHW0_YLDV] [TNFA_HUMAN] by SWISSPFAM
  • Domains found in 3IT8: [IG_like] [TNF ] by SMART
  • Other resources with information on 3IT8
  • Community annotation for 3IT8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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