3IW4 Transferase date Sep 02, 2009
title Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
authors W.Stark, G.Rummel, A.Strauss, S.W.Cowan-Jacob
compound source
Molecule: Protein Kinase C Alpha Type
Chain: A, B, C
Fragment: Kinase Domain, Unp Residues 320-672
Synonym: Pkc-Alpha, Pkc-A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prkca, Pkca, Prkaca
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pxi525e
symmetry Space Group: P 21 21 21
R_factor 0.192 R_Free 0.277
length a length b length c angle alpha angle beta angle gamma
43.868 100.669 251.335 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand LW4, SEP, TPO BindingDB enzyme Transferase E.C. BRENDA
A, C, B

Primary referenceDiscovery of 3-(1H-indol-3-yl)-4-[2-(4-methylpiperazin-1-yl)quinazolin-4-yl]pyrrole-2,5 -dione (AEB071), a potent and selective inhibitor of protein kinase C isotypes., Wagner J, von Matt P, Sedrani R, Albert R, Cooke N, Ehrhardt C, Geiser M, Rummel G, Stark W, Strauss A, Cowan-Jacob SW, Beerli C, Weckbecker G, Evenou JP, Zenke G, Cottens S, J Med Chem. 2009 Oct 22;52(20):6193-6. PMID:19827831
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (173 Kb) [Save to disk]
  • Biological Unit Coordinates (3iw4.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (3iw4.pdb2.gz) 57 Kb
  • Biological Unit Coordinates (3iw4.pdb3.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 3IW4
  • CSU: Contacts of Structural Units for 3IW4
  • Structure Factors (430 Kb)
  • Retrieve 3IW4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IW4 from S2C, [Save to disk]
  • Re-refined 3iw4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3IW4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3IW4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3IW4, from MSDmotif at EBI
  • Fold representative 3iw4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3iw4_A] [3iw4_B] [3iw4] [3iw4_C]
  • SWISS-PROT database: [P17252]
  • Domain organization of [KPCA_HUMAN] by SWISSPFAM
  • Domains found in 3IW4: [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 3IW4
  • Community annotation for 3IW4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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