3IYD date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CMP BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, A


C


D


E


F
  • bacterial sigma factor activ...


    • H, G


    Primary referenceThree-dimensional EM structure of an intact activator-dependent transcription initiation complex., Hudson BP, Quispe J, Lara-Gonzalez S, Kim Y, Berman HM, Arnold E, Ebright RH, Lawson CL, Proc Natl Acad Sci U S A. 2009 Nov 24;106(47):19830-5. Epub 2009 Nov 10. PMID:19903881
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (598 Kb) [Save to disk]
  • Biological Unit Coordinates (3iyd.pdb1.gz) 591 Kb
  • LPC: Ligand-Protein Contacts for 3IYD
  • CSU: Contacts of Structural Units for 3IYD
  • Retrieve 3IYD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IYD from S2C, [Save to disk]
    • View 3IYD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3iyd] [3iyd_A] [3iyd_B] [3iyd_C] [3iyd_D] [3iyd_E] [3iyd_F] [3iyd_G] [3iyd_H] [3iyd_I] [3iyd_J]
  • SWISS-PROT database: [P0ACJ8] [P0A7Z4] [P0A8V2] [P0A8T7] [P00579] [P0A800]
  • Domains found in 3IYD: [HTH_CRP] [RNA_pol_Rpb6] [RPOLA_N] [RPOLD] [cNMP ] by SMART

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