3IYS Virus date Apr 19, 2010
title Homology Model Of Avian Polyomavirus Asymmetric Unit
authors P.S.Shen, D.Enderlein, C.D.S.Nelson, W.S.Carter, M.Kawano, L.Xing R.D.Swenson, N.H.Olson, T.S.Baker, R.H.Cheng, W.J.Atwood, R.John D.M.Belnap
compound source
Molecule: Major Capsid Protein Vp1
Chain: A, B, C, D, E, F
Synonym: Major Structural Protein Vp1
 Organism_scientific: Budgerigar Fledgling Disease Polyomavi
Organism_common: Bfpyv
Organism_taxid: 10625
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 11.30 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceThe structure of avian polyomavirus reveals variably sized capsids, non-conserved inter-capsomere interactions, and a possible location of the minor capsid protein VP4., Shen PS, Enderlein D, Nelson CD, Carter WS, Kawano M, Xing L, Swenson RD, Olson NH, Baker TS, Cheng RH, Atwood WJ, Johne R, Belnap DM, Virology. 2011 Jan 14. PMID:21239031
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (3iys.pdb1.gz) 2125 Kb
  • CSU: Contacts of Structural Units for 3IYS
  • Retrieve 3IYS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IYS from S2C, [Save to disk]
    • View 3IYS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3IYS
  • VIPERdb: visual, structural and computational analysis of 3IYS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3IYS, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3iys_B] [3iys_F] [3iys] [3iys_A] [3iys_E] [3iys_C] [3iys_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3IYS
  • Community annotation for 3IYS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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