3IYV	Endocytosis Exocytosis	date	Jun 17, 2010
title	Clathrin D6 Coat As Full-Length Triskelions
authors	G.T.Johnson, A.Fotin, Y.Cheng, P.Sliz, N.Grigorieff, S.C.Harrison T.Kirchhausen, T.Walz
compound		source
Molecule: Clathrin Heavy Chain Chain: A, B, C, D, E, F, G, H, I Fragment: Unp Residues 1-1630		Organism_scientific: Bos Taurus Organism_common: Cow Organism_taxid: 9913 Tissue: Brain
Molecule: Clathrin Light Chain A Chain: J, K, L, M, N, O, P, Q, R Fragment: Unp Residues 95-164 Synonym: Lca		Organism_scientific: Bos Taurus Organism_common: Cow Organism_taxid: 9913 Tissue: Brain
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	7.90 Å
Gene Ontology	Chain Function Process Component F, E, C, A, B, H, D, I, G N, K, Q, M, L, J, O, P, R
Primary reference	Molecular model for a complete clathrin lattice from electron cryomicroscopy., Fotin A, Cheng Y, Sliz P, Grigorieff N, Harrison SC, Kirchhausen T, Walz T, Nature. 2004 Dec 2;432(7017):573-9. Epub 2004 Oct 24. PMID:15502812

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (278 Kb) [Save to disk] Biological Unit Coordinates (3iyv.pdb1.gz) 3234 Kb CSU: Contacts of Structural Units for 3IYV Retrieve 3IYV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3IYV from S2C, [Save to disk]

View 3IYV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3IYV

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3IYV, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3iyv_L] [3iyv_C] [3iyv_F] [3iyv_H] [3iyv_A] [3iyv] [3iyv_Q] [3iyv_R] [3iyv_M] [3iyv_D] [3iyv_O] [3iyv_G] [3iyv_N] [3iyv_E] [3iyv_B] [3iyv_J] [3iyv_K] [3iyv_I] [3iyv_P] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3IYV: [CLH ] by SMART

Other resources with information on 3IYV

Community annotation for 3IYV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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