3IZ0 Cell Cycle date Aug 09, 2010
title Human Ndc80 Bonsai Decorated Microtubule
authors G.M.Alushin, V.H.Ramey, S.Pasqualato, D.A.Ball, N.Grigorieff, A.M E.Nogales
compound source
Molecule: Alpha Tubulin, Chain A From Pdb 1jff
Chain: A
Organism_scientific: Bos Taurus
Organism_taxid: 9913
Tissue: Brain
Cellular_location: Cytoskeleton

Molecule: Beta Tubulin, Chain B From Pdb 1jff
Chain: B

Organism_scientific: Bos Taurus
Organism_taxid: 9913
Tissue: Brain
Cellular_location: Cytoskeleton

Molecule: Ndc80-Spc25 Chimera Protein, Chain B From Pdb 2ve Bonsai);
Chain: C, E
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ndc80 Spc25, Spbc25, Ad024
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p-2rbs

Molecule: Nuf2-Spc24 Chimera Protein, Chain D From Pdb 2ve7 Bonsai);
Chain: D, F
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nuf2, Rp11-77m5.2-004, Spc24
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p-2rbs
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 8.60 Å
ligand GDP, GTP, MG, TA1, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


C, E


F, D


Primary referenceThe Ndc80 kinetochore complex forms oligomeric arrays along microtubules., Alushin GM, Ramey VH, Pasqualato S, Ball DA, Grigorieff N, Musacchio A, Nogales E, Nature. 2010 Oct 14;467(7317):805-10. PMID:20944740
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (256 Kb) [Save to disk]
  • Biological Unit Coordinates (3iz0.pdb1.gz) 247 Kb
  • LPC: Ligand-Protein Contacts for 3IZ0
  • CSU: Contacts of Structural Units for 3IZ0
  • Retrieve 3IZ0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IZ0 from S2C, [Save to disk]
  • View 3IZ0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3IZ0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3IZ0, from MSDmotif at EBI
  • Fold representative 3iz0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3iz0] [3iz0_E] [3iz0_A] [3iz0_B] [3iz0_C] [3iz0_F] [3iz0_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3IZ0: [Tubulin] [Tubulin_C ] by SMART
  • Other resources with information on 3IZ0
  • Community annotation for 3IZ0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science