OCA Atlas for 3J1X

3J1X

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
X, V, K, W, J, M, D, L, H, E, U, P, F, I, C, R, S, N, A, G, B, O, T, Q

Primary reference

A Refined Model of the Prototypical Salmonella SPI-1 T3SS Basal Body Reveals the Molecular Basis for Its Assembly., Bergeron JR, Worrall LJ, Sgourakis NG, Dimaio F, Pfuetzner RA, Felise HB, Vuckovic M, Yu AC, Miller SI, Baker D, Strynadka NC, PLoS Pathog. 2013 Apr;9(4):e1003307. doi: 10.1371/journal.ppat.1003307. Epub 2013, Apr 25. PMID:23633951

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (637 Kb) [Save to disk]

Biological Unit Coordinates (3j1x.pdb1.gz) 635 Kb

CSU: Contacts of Structural Units for 3J1X

Retrieve 3J1X in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3J1X from S2C, [Save to disk]

View 3J1X in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3j1x] [3j1x_A] [3j1x_B] [3j1x_C] [3j1x_D] [3j1x_E] [3j1x_F] [3j1x_G] [3j1x_H] [3j1x_I] [3j1x_J] [3j1x_K] [3j1x_L] [3j1x_M] [3j1x_N] [3j1x_O] [3j1x_P] [3j1x_Q] [3j1x_R] [3j1x_S] [3j1x_T] [3j1x_U] [3j1x_V] [3j1x_W] [3j1x_X]

SWISS-PROT database:

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