3J22 Virus date Aug 13, 2012
title The Enterovirus 71 A-Particle
authors K.L.Shingler
compound source
Molecule: Capsid Protein Vp1
Chain: A
Fragment: Unp Residues 638-862
 Organism_scientific: Human Enterovirus 71
Organism_common: Ev71
Organism_taxid: 39054

Molecule: Capsid Protein Vp0
Chain: B
Fragment: Unp Residues 82-318
Synonym: Capsid Protein Vp2
Organism_scientific: Human Enterovirus 71
Organism_common: Ev71
Organism_taxid: 39054

Molecule: Capsid Protein Vp3
Chain: C
Fragment: Unp Residues 324-562
Organism_scientific: Human Enterovirus 71
Organism_common: Ev71
Organism_taxid: 39054
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 6.30 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceThe Enterovirus 71 A-particle Forms a Gateway to Allow Genome Release: A CryoEM Study of Picornavirus Uncoating., Shingler KL, Yoder JL, Carnegie MS, Ashley RE, Makhov AM, Conway JF, Hafenstein S, PLoS Pathog. 2013 Mar;9(3):e1003240. doi: 10.1371/journal.ppat.1003240. Epub 2013, Mar 21. PMID:23555253
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (3j22.pdb1.gz) 6407 Kb
  • CSU: Contacts of Structural Units for 3J22
  • Retrieve 3J22 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3J22 from S2C, [Save to disk]
    • View 3J22 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3J22
  • VIPERdb: visual, structural and computational analysis of 3J22
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3J22, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3j22] [3j22_C] [3j22_B] [3j22_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3J22
  • Community annotation for 3J22 at PDBWiki (http://pdbwiki.org)

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