3J24 Immune System date Aug 17, 2012
title Cryoem Reconstruction Of Complement Decay-Accelerating Facto
authors J.D.Yoder, S.H.Hafenstein
compound source
Molecule: Complement Decay-Accelerating Factor
Chain: B
Fragment: Four Extracellular Scr Domains (Unp Residues 35-2
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cd55, Cr, Daf
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 9.00 Å
Primary referenceThe crystal structure of a coxsackievirus B3-RD variant, and a refined 9A cryoEM reconstruction of the virus complexed with decay accelerating factor (DAF), provide a new footprint of DAF onto the virus surface., Yoder JD, Cifuente JO, Pan J, Bergelson JM, Hafenstein S, J Virol. 2012 Sep 12. PMID:22973031
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (3j24.pdb1.gz) 2337 Kb
  • CSU: Contacts of Structural Units for 3J24
  • Retrieve 3J24 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3J24 from S2C, [Save to disk]
    • View 3J24 in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3J24
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3J24, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3j24_B] [3j24]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3J24: [CCP ] by SMART
    • Other resources with information on 3J24
  • Community annotation for 3J24 at PDBWiki (http://pdbwiki.org)
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