3J2F Ribosome date Sep 28, 2012
title Dissecting The In Vivo Assembly Of The 30s Ribosomal Subunit The Role Of Rimm
authors Q.Guo, S.Goto, Y.Chen, A.Muto, H.Himeno, H.Deng, J.Lei, N.Gao
compound source
Molecule: 16s Rrna
Chain: N
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 17.60 Å
Primary referenceDissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM and general features of the assembly process., Guo Q, Goto S, Chen Y, Feng B, Xu Y, Muto A, Himeno H, Deng H, Lei J, Gao N, Nucleic Acids Res. 2013 Jan 4. PMID:23293003
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (807 Kb) [Save to disk]
  • Biological Unit Coordinates (3j2f.pdb1.gz) 803 Kb
  • CSU: Contacts of Structural Units for 3J2F
  • Retrieve 3J2F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3J2F from S2C, [Save to disk]
    • View 3J2F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3J2F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3J2F, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3j2f_N] [3j2f]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3J2F
  • Community annotation for 3J2F at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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