3J63 Apoptosis date Dec 05, 2013
title Unified Assembly Mechanism Of Asc-Dependent Inflammasomes
authors A.Lu, V.G.Magupalli, J.Ruan, Q.Yin, M.K.Atianand, M.Vos, G.F.Schro K.A.Fitzgerald, H.Wu, E.H.Egelman
compound source
Molecule: Apoptosis-Associated Speck-Like Protein Containin
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O
Fragment: Pyrin Domain (Unp Residues 1-91)
Synonym: Hasc, Caspase Recruitment Domain-Containing Protei And Card Domain-Containing Protein, Target Of Methylation-I Silencing 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pycard, Asc, Card5, Tms1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.80 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, O, J, N, K, E, B, H, M, C, D, I, G, L


Primary referenceUnified Polymerization Mechanism for the Assembly of ASC-Dependent Inflammasomes., Lu A, Magupalli VG, Ruan J, Yin Q, Atianand MK, Vos MR, Schroder GF, Fitzgerald KA, Wu H, Egelman EH, Cell. 2014 Mar 13;156(6):1193-206. doi: 10.1016/j.cell.2014.02.008. PMID:24630722
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (190 Kb) [Save to disk]
  • Biological Unit Coordinates (3j63.pdb1.gz) 187 Kb
  • CSU: Contacts of Structural Units for 3J63
  • Retrieve 3J63 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3J63 from S2C, [Save to disk]
  • View 3J63 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3J63
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3J63, from MSDmotif at EBI
  • Fold representative 3j63 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3j63_D] [3j63_E] [3j63_J] [3j63] [3j63_C] [3j63_O] [3j63_G] [3j63_M] [3j63_L] [3j63_H] [3j63_B] [3j63_K] [3j63_N] [3j63_A] [3j63_I] [3j63_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3J63: [PYRIN ] by SMART
  • Other resources with information on 3J63
  • Community annotation for 3J63 at PDBWiki (http://pdbwiki.org)

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