3J7Z Ribosome Antibiotic date Aug 27, 2014
title Structure Of The E. Coli 50s Subunit With Ermcl Nascent Chai
authors S.Arenz, S.Meydan, A.L.Starosta, O.Berninghausen, R.Beckmann, N.V Laslop, D.N.Wilson
compound source
Molecule: 50s Ribosomal Protein L32
Chain
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L33
Chain: 1

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L34
Chain: 2

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L35
Chain: 3

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L36
Chain: 4

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L10
Chain: 5

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L7l12
Chain: 6

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: P-Trna Cca-End
Chain: 7

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 23s Rrna
Chain: A

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 5s Rrna
Chain: B

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L2
Chain: C

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L3
Chain: D

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L4
Chain: E

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L5
Chain: F

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L6
Chain: G

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L9
Chain: H

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L11
Chain: I

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L13
Chain: J

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L14
Chain: K

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L15
Chain: L

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L16
Chain: M

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L17
Chain: N

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L18
Chain: O

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L19
Chain: P

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L20
Chain: Q

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L21
Chain: R

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L22
Chain: S

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L23
Chain: T

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L24
Chain: U

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L25
Chain: V

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L27
Chain: W

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L28
Chain: X

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L29
Chain: Y

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L30
Chain: Z

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: Ermcl Nascent Chain
Chain: a

Organism_scientific: Staphylococcus Aureus
Organism_taxid: 1280
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.90 Å
ligand ERY enzyme
Gene
Ontology
ChainFunctionProcessComponent
0


1


2


3


4


5


6


C


D


E


F


G


H


I


J


K


L


M


N


O


P


Q
  • translation repressor activi...


  • R


    S


    T


    U


    V


    W


    X


    Y


    Z


    a


    Primary referenceDrug Sensing by the Ribosome Induces Translational Arrest via Active Site Perturbation., Arenz S, Meydan S, Starosta AL, Berninghausen O, Beckmann R, Vazquez-Laslop N, Wilson DN, Mol Cell. 2014 Oct 1. pii: S1097-2765(14)00746-1. doi:, 10.1016/j.molcel.2014.09.014. PMID:25306253
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1791 Kb) [Save to disk]
  • Biological Unit Coordinates (3j7z.pdb1.gz) 1781 Kb
  • LPC: Ligand-Protein Contacts for 3J7Z
  • CSU: Contacts of Structural Units for 3J7Z
  • Retrieve 3J7Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3J7Z from S2C, [Save to disk]
  • View 3J7Z in 3D
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3J7Z
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  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3J7Z, from MSDmotif at EBI
  • Fold representative 3j7z from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3j7z_7] [3j7z_D] [3j7z_W] [3j7z_2] [3j7z_1] [3j7z_E] [3j7z_Y] [3j7z_K] [3j7z_a] [3j7z_5] [3j7z_0] [3j7z_J] [3j7z_H] [3j7z_I] [3j7z_M] [3j7z_X] [3j7z_B] [3j7z_U] [3j7z_Z] [3j7z_L] [3j7z_O] [3j7z_C] [3j7z_G] [3j7z_N] [3j7z_P] [3j7z_R] [3j7z_4] [3j7z] [3j7z_3] [3j7z_A] [3j7z_T] [3j7z_6] [3j7z_V] [3j7z_Q] [3j7z_F] [3j7z_S]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3J7Z: [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C ] by SMART
  • Other resources with information on 3J7Z
  • Community annotation for 3J7Z at PDBWiki (http://pdbwiki.org)

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