3J8B Translation date Oct 08, 2014
title Model Of The Human Eif3 Pci-Mpn Octamer Docked Into The 43s- Em Map
authors J.P.Erzberger, N.Ban
compound source
Molecule: Eukaryotic Translation Initiation Factor 3 Subuni
Chain: A
Fragment: See Remark 999
Synonym: Eif3a, Eukaryotic Translation Initiation Factor 3 10, Eif-3-Theta, Eif3 P167, Eif3 P180, Eif3 P185;
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Eukaryotic Translation Initiation Factor 3 Subuni
Chain: C
Fragment: See Remark 999
Synonym: Eif3c, Eukaryotic Translation Initiation Factor 3 Eif3 P110;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Eukaryotic Translation Initiation Factor 3 Subuni
Chain: E
Fragment: See Remark 999
Synonym: Eif3e, Eukaryotic Translation Initiation Factor 3 Viral Integration Site Protein Int-6 Homolog, Eif-3 P48;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Eukaryotic Translation Initiation Factor 3 Subuni
Chain: F
Fragment: See Remark 999
Synonym: Eif3f, Deubiquitinating Enzyme Eif3f, Eukaryotic T Initiation Factor 3 Subunit 5, Eif-3-Epsilon, Eif3 P47;
Ec: 3.4.19.12
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Eukaryotic Translation Initiation Factor 3 Subuni
Chain: H
Fragment: See Remark 999
Synonym: Eif3h, Eukaryotic Translation Initiation Factor 3 Eif-3-Gamma, Eif3 P40 Subunit;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Eukaryotic Translation Initiation Factor 3 Subuni
Chain: K
Fragment: See Remark 999
Synonym: Eif3k, Eukaryotic Translation Initiation Factor 3 12, Muscle-Specific Gene M9 Protein, Plac-24, Eif-3 P25, Ei
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Eukaryotic Translation Initiation Factor 3 Subuni
Chain: L
Fragment: See Remark 999
Synonym: Eif3l, Eukaryotic Translation Initiation Factor 3 Interacting Protein, Eukaryotic Translation Initiation Fact Subunit E-Interacting Protein;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Eukaryotic Translation Initiation Factor 3 Subuni
Chain: M
Fragment: See Remark 999
Synonym: Eif3m, Fetal Lung Protein B5, Hfl-B5, Pci Domain-C Protein 1
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 9.30 Å
ligand
enzyme Hydrolase E.C.3.4.19.12 BRENDA
note 3J8B supersedes 3J7J
Gene
Ontology
ChainFunctionProcessComponent
A


C


E


F


H


K


L

  • eukaryotic translation initi...
    • M

  • eukaryotic translation initi...
    • Primary referenceMolecular Architecture of the 40SeIF1eIF3 Translation Initiation Complex., Erzberger JP, Stengel F, Pellarin R, Zhang S, Schaefer T, Aylett CH, Cimermancic P, Boehringer D, Sali A, Aebersold R, Ban N, Cell. 2014 Aug 28;158(5):1123-35. doi: 10.1016/j.cell.2014.07.044. PMID:25171412
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (222 Kb) [Save to disk]
  • Biological Unit Coordinates (3j8b.pdb1.gz) 214 Kb
  • CSU: Contacts of Structural Units for 3J8B
  • Retrieve 3J8B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3J8B from S2C, [Save to disk]
    • View 3J8B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3J8B
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3J8B, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3j8b_E] [3j8b_H] [3j8b_A] [3j8b_F] [3j8b] [3j8b_M] [3j8b_K] [3j8b_L] [3j8b_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3J8B: [JAB_MPN] [PINT] [eIF3_N ] by SMART
    • Other resources with information on 3J8B
  • Community annotation for 3J8B at PDBWiki (http://pdbwiki.org)

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