3J8G Ribosome date Oct 24, 2014
title Electron Cryo-Microscopy Structure Of Enga Bound With The 50 Ribosomal Subunit
authors X.Zhang, K.Yan, Y.Zhang, N.Li, C.Ma, Z.Li, Y.Zhang, B.Feng, J.Liu, Y. J.Lei, N.Gao
compound source
Molecule: 5s Rrna
Chain: A
Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: 23s Rrna
Chain: B

Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L28
Chain

Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L14
Chain: K

Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L15
Chain: L

Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L29
Chain: 1

Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L16
Chain: M

Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L17
Chain: N

Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L18
Chain: O

Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L19
Chain: P

Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L20
Chain: Q

Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L21
Chain: R

Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L22
Chain: S

Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L3
Chain: D

Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L23
Chain: T

Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L30
Chain: 2

Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L24
Chain: U

Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L25
Chain: W

Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: Gtpase Der
Chain: X
Synonym: Gtpase Enga, Gtp-Binding Protein Enga
Engineered: Yes

Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a

Molecule: 50s Ribosomal Protein L4
Chain: E

Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L27
Chain: Y

Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L32
Chain: 3

Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L1
Chain: 5

Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L34
Chain: 6

Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L35
Chain: 7

Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L36
Chain: 8

Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L2
Chain: C

Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L5
Chain: F

Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L6
Chain: G

Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L9
Chain: H

Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L11
Chain: I

Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L13
Chain: J

Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 5.00 Å
Gene
Ontology
ChainFunctionProcessComponent
0


1


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3


5


6


7


8


C


D


E


F


G


H


I


J


K


L


M


N


O


P


Q
  • translation repressor activi...


  • R


    S


    T


    U


    W


    X


    Y


    Primary referenceStructural insights into the function of a unique tandem GTPase EngA in bacterial ribosome assembly., Zhang X, Yan K, Zhang Y, Li N, Ma C, Li Z, Zhang Y, Feng B, Liu J, Sun Y, Xu Y, Lei J, Gao N, Nucleic Acids Res. 2014 Nov 11. pii: gku1135. PMID:25389271
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1612 Kb) [Save to disk]
  • Biological Unit Coordinates (3j8g.pdb1.gz) 1602 Kb
  • CSU: Contacts of Structural Units for 3J8G
  • Retrieve 3J8G in mmCIF format [Save to disk]
  • View 3J8G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3J8G
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3J8G, from MSDmotif at EBI
  • Fold representative 3j8g from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3j8g_L] [3j8g_A] [3j8g_T] [3j8g_Y] [3j8g_O] [3j8g_G] [3j8g_H] [3j8g_W] [3j8g_C] [3j8g_D] [3j8g_P] [3j8g_0] [3j8g_X] [3j8g_2] [3j8g_6] [3j8g_E] [3j8g_5] [3j8g_F] [3j8g_M] [3j8g_1] [3j8g_N] [3j8g_K] [3j8g_Q] [3j8g_J] [3j8g_S] [3j8g] [3j8g_3] [3j8g_R] [3j8g_B] [3j8g_8] [3j8g_7] [3j8g_I] [3j8g_U]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3J8G: [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [small_GTPase ] by SMART
  • Other resources with information on 3J8G
  • Community annotation for 3J8G at PDBWiki (http://pdbwiki.org)

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