3J9X A Virus that Infects a Hyperthermophile Encapsidates A-Form DNA date
authors DiMaio, F., Yu, X., Rensen, E., Krupovic, M., Prangishvili, D., Egelman, E.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.80
Primary referenceVirology. A virus that infects a hyperthermophile encapsidates A-form DNA., DiMaio F, Yu X, Rensen E, Krupovic M, Prangishvili D, Egelman EH, Science. 2015 May 22;348(6237):914-7. doi: 10.1126/science.aaa4181. PMID:25999507
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1198 Kb) [Save to disk]
  • Biological Unit Coordinates (3j9x.pdb1.gz) 1196 Kb
  • CSU: Contacts of Structural Units for 3J9X
  • Retrieve 3J9X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3J9X from S2C, [Save to disk]
    • View 3J9X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3J9X
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3J9X, from MSDmotif at EBI
  • Fold representative 3j9x from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3j9x_C] [3j9x_n] [3j9x_4] [3j9x_z] [3j9x_e] [3j9x_U] [3j9x_j] [3j9x_Q] [3j9x_b] [3j9x_S] [3j9x_V] [3j9x_w] [3j9x_P] [3j9x_R] [3j9x_3] [3j9x] [3j9x_B] [3j9x_p] [3j9x_F] [3j9x_2] [3j9x_G] [3j9x_J] [3j9x_l] [3j9x_f] [3j9x_d] [3j9x_O] [3j9x_i] [3j9x_1] [3j9x_E] [3j9x_s] [3j9x_v] [3j9x_M] [3j9x_X] [3j9x_W] [3j9x_h] [3j9x_6] [3j9x_g] [3j9x_5] [3j9x_T] [3j9x_q] [3j9x_x] [3j9x_u] [3j9x_L] [3j9x_a] [3j9x_H] [3j9x_Z] [3j9x_Y] [3j9x_k] [3j9x_c] [3j9x_m] [3j9x_8] [3j9x_N] [3j9x_K] [3j9x_t] [3j9x_D] [3j9x_o] [3j9x_A] [3j9x_I] [3j9x_r] [3j9x_7] [3j9x_y]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3J9X
  • Community annotation for 3J9X at PDBWiki (http://pdbwiki.org)

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