3JBL Immune System date Sep 05, 2015
title Cryo-Em Structure Of The Activated Naip2nlrc4 Inflammasome Nucleated Polymerization
authors L.Zhang, S.Chen, J.Ruan, J.Wu, A.B.Tong, Q.Yin, Y.Li, L.David, A.Lu, C.Marks, Q.Ouyang, X.Zhang, Y.Mao, H.Wu
compound source
Molecule: Nlr Family Card Domain-Containing Protein 4
Chain: K, A, B, C, D, E, F, G, H, I, J
Fragment: Unp Residues 93-1024, See Remark 999
Synonym: Nlrc4, Caspase Recruitment Domain-Containing Prote Protease-Activating Factor, Ipaf;
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Strain: Raw 264.7
Cell_line: Macrophage
Tissue: Abelson Murine Leukemia Virus-Induced Tumor; Ascite
Cellular_location: Cytosol
Gene: Nlrc4, Card12, Ipaf
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Iplb-Sf21-Ae
Expression_system_cell_line: Sf21
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac1
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.50 Å
ligand SEP enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G
  • ubiquitin-protein transferas...


  • Primary referenceCryo-EM structure of the activated NAIP2-NLRC4 inflammasome reveals nucleated polymerization., Zhang L, Chen S, Ruan J, Wu J, Tong AB, Yin Q, Li Y, David L, Lu A, Wang WL, Marks C, Ouyang Q, Zhang X, Mao Y, Wu H, Science. 2015 Oct 8. pii: aac5789. PMID:26449474
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1651 Kb) [Save to disk]
  • Biological Unit Coordinates (3jbl.pdb1.gz) 1643 Kb
  • LPC: Ligand-Protein Contacts for 3JBL
  • CSU: Contacts of Structural Units for 3JBL
  • Retrieve 3JBL in mmCIF format [Save to disk]
  • View 3JBL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3JBL
  • Cartoon representation from PDB Cartoon
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  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 3jbl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jbl_J] [3jbl_B] [3jbl] [3jbl_F] [3jbl_G] [3jbl_I] [3jbl_C] [3jbl_A] [3jbl_K] [3jbl_D] [3jbl_E] [3jbl_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3JBL: [LRR ] by SMART
  • Other resources with information on 3JBL
  • Community annotation for 3JBL at PDBWiki (http://pdbwiki.org)

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