3JCR | Splicing | date | Jan 21, 2016 |
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title | 3d Structure Determination Of The Humanu4u6.U5 Tri-Snrnp | ||||||||||||||
authors | D.E.Agafonov, B.Kastner, O.Dybkov, R.V.Hofele, W.T.Liu, H.Urlaub, R.Luhrmann, H.Stark | ||||||||||||||
compound | source | ||||||||||||||
Molecule: Hprp6 Chain: G Synonym: Pre-Mrna-Processing Factor 6, Androgen Receptor N- Domain-Transactivating Protein 1, Ant-1, Prp6 Homolog, U5 S Associated 102 Kda Protein, U5-102 Kda Protein; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: U5-40k Chain: D Synonym: U5 Small Nuclear Ribonucleoprotein 40 Kda Protein, 40 Kda Protein, U5-40k, 38 Kda-Splicing Factor, Prp8-Bindin Hprp8bp, U5 Snrnp-Specific 40 Kda Protein, Wd Repeat-Contai Protein 57; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Hbrr2 Chain: C Synonym: U5 Small Nuclear Ribonucleoprotein 200 Kda Helicas Activating Signal Cointegrator 1 Complex Subunit 3-Like 1, Homolog, U5 Snrnp-Specific 200 Kda Protein, U5-200kd; Ec: 3.6.4.13 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Hdim1 Chain: E Synonym: Thioredoxin-Like Protein 4a, Dim1 Protein Homolog, Spliceosomal U5 Snrnp-Specific 15 Kda Protein, Thioredoxin- Snrnp Protein U5-15kd; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Hprp8 Chain: A Synonym: Pre-Mrna-Processing-Splicing Factor 8, 220 Kda U5 Specific Protein, Prp8 Homolog, Splicing Factor Prp8, P220; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Hprp28 Chain: F Synonym: Probable Atp-Dependent Rna Helicase Ddx23, 100 Kda Specific Protein, Dead Box Protein 23, Prp28 Homolog, U5-10 Ec: 3.6.4.13 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Hsnu114 Chain: B Synonym: 116 Kda U5 Small Nuclear Ribonucleoprotein Compone Elongation Factor Tu Gtp-Binding Domain-Containing Protein Homolog, Hsnu114, U5 Snrnp-Specific Protein, 116 Kda, U5-11 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Smb Chain: O, o Synonym: Small Nuclear Ribonucleoprotein-Associated Protein B', Snrnp-B, Sm Protein Bb', Sm-Bb', Smbb'; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Smd1 Chain: P, p Synonym: Small Nuclear Ribonucleoprotein Sm D1, Sm-D1, Sm-D Autoantigen, Snrnp Core Protein D1; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Smd2 Chain: Q, q Synonym: Small Nuclear Ribonucleoprotein Sm D2, Sm-D2, Snrn Protein D2; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Smd3 Chain: R, r Synonym: Small Nuclear Ribonucleoprotein Sm D3, Sm-D3, Snrn Protein D3; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Sme Chain: S, s Synonym: Small Nuclear Ribonucleoprotein E, Snrnp-E, Sm Pro Sm-E, Sme; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Smf Chain: T, t Synonym: Small Nuclear Ribonucleoprotein F, Snrnp-F, Sm Pro Sm-F, Smf; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Smg Chain: U, u Synonym: Small Nuclear Ribonucleoprotein G, Snrnp-G, Sm Pro Sm-G, Smg; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Lsm8 Chain: 8 Synonym: U6 Snrna-Associated Sm-Like Protein Lsm8 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Lsm6 Chain: 6 Synonym: U6 Snrna-Associated Sm-Like Protein Lsm6 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Lsm5 Chain: 5 Synonym: U6 Snrna-Associated Sm-Like Protein Lsm5 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Lsm4 Chain: 4 Synonym: U6 Snrna-Associated Sm-Like Protein Lsm4, Glycine- Protein, Grp; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Lsm3 Chain: 3 Synonym: U6 Snrna-Associated Sm-Like Protein Lsm3 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Lsm2 Chain: 2 Synonym: U6 Snrna-Associated Sm-Like Protein Lsm2, Protein Nuclear Ribonuclear Protein D Homolog, Snrnp Core Sm-Like P X5; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Lsm7 Chain: 7 Synonym: U6 Snrna-Associated Sm-Like Protein Lsm7 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Hprp3 Chain: K Synonym: U4u6 Small Nuclear Ribonucleoprotein Prp3, Pre-Mr Splicing Factor 3, Hprp3, U4u6 Snrnp 90 Kda Protein; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Hprp4 Chain: L Synonym: 60 Kda U4u6 Snrnp-Specific Spliceosomal Protein, Mrna Processing Factor 4 Homolog (Yeast), Isoform Cra_b; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Hprp31 Chain: J Synonym: U4u6 Small Nuclear Ribonucleoprotein Prp31, Pre-M Processing Factor 31, Serologically Defined Breast Cancer A Br-99, U4u6 Snrnp 61 Kda Protein, Protein 61k, Hprp31; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Hsnu13 Chain: I Synonym: Nhp2-Like Protein 1, High Mobility Group-Like Nucl Protein 2 Homolog 1, Otk27, Snu13 Homolog, Hsnu13, U4u6.U5 Nuclear Ribonucleoprotein Snu13, U4u6.U5 Tri-Snrnp 15.5 Kd Nhp2-Like Protein 1, N-Terminally Processed; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Hsad1 Chain: V Synonym: U4u6.U5 Tri-Snrnp-Associated Protein 2, Inactive Specific Peptidase 39, Sad1 Homolog, U4u6.U5 Tri-Snrnp-Ass Kda Protein, 65k; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: U4 Snrna Chain: M |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: U6 Snrna Chain: N |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: U5 Snrna Chain: H |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
symmetry | Space Group: P 1 |
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crystal cell |
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method | Electron Microscopy | resolution | 7.00 Å | ||||||||||||
ligand | enzyme | Hydrolase E.C.3.6.4.13 BRENDA | |||||||||||||
Gene Ontology | |||||||||||||||
Primary reference | Molecular architecture of the human U4/U6.U5 tri-snRNP., Agafonov DE, Kastner B, Dybkov O, Hofele RV, Liu WT, Urlaub H, Luhrmann R, Stark H, Science. 2016 Feb 18. pii: aad2085. PMID:26912367 |
Data retrieval |
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Structure-derived information |
Sequence-derived information |
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OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science |