3JCX Virus Immune System date Mar 21, 2016
title Canine Parvovirus Complexed With Fab E
authors L.J.Organtini, S.Iketani, K.Huang, R.E.Ashley, A.M.Makhov, J.F.Co C.R.Parrish, S.Hafenstein
compound source
Molecule: Capsid Protein 2
Chain: A
Synonym: Vp2
Organism_scientific: Canine Parvovirus
Organism_common: Cpv-2
Organism_taxid: 10788

Molecule: Fab E Heavy Chain
Chain: H

Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Strain: B5a8

Molecule: Fab E Light Chain
Chain: L

Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Strain: B5a8
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.10 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe near-atomic resolution structure of a highly neutralizing Fab bound to canine parvovirus., Organtini LJ, Lee H, Iketani S, Huang K, Ashley RE, Makhov AM, Conway JF, Parrish CR, Hafenstein S, J Virol. 2016 Aug 17. pii: JVI.01112-16. PMID:27535057
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (3jcx.pdb1.gz) 6393 Kb
  • CSU: Contacts of Structural Units for 3JCX
  • Retrieve 3JCX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JCX from S2C, [Save to disk]
  • View 3JCX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3JCX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jcx_H] [3jcx_A] [3jcx] [3jcx_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3JCX: [IGv ] by SMART
  • Other resources with information on 3JCX
  • Community annotation for 3JCX at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science