3JD6 Cell Adhesion date Apr 12, 2016
title Double Octamer Structure Of Retinoschisin, A Cell-Cell Adhes Protein Of The Retina
authors G.Tolun, C.Vijayasarathy, R.Huang, Y.Zeng, Y.Li, A.C.Steven, P.A.S J.B.Heymann
compound source
Molecule: Retinoschisin
Chain: O
Fragment: Unp Residues 24-224
Synonym: Rs1, X-Linked Juvenile Retinoschisis Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rs1, Xlrs1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Bacmid
Expression_system_plasmid: 11109-E01
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.10 Å
Gene
Ontology
ChainFunctionProcessComponent
O


Primary referencePaired octamer rings of retinoschisin suggest a junctional model for cell-cell adhesion in the retina., Tolun G, Vijayasarathy C, Huang R, Zeng Y, Li Y, Steven AC, Sieving PA, Heymann JB, Proc Natl Acad Sci U S A. 2016 May 10;113(19):5287-92. doi:, 10.1073/pnas.1519048113. Epub 2016 Apr 25. PMID:27114531
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (3jd6.pdb1.gz) 726 Kb
  • CSU: Contacts of Structural Units for 3JD6
  • Retrieve 3JD6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JD6 from S2C, [Save to disk]
  • View 3JD6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3JD6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 3jd6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jd6] [3jd6_O]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3JD6: [FA58C ] by SMART
  • Other resources with information on 3JD6
  • Community annotation for 3JD6 at PDBWiki (http://pdbwiki.org)

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