3JPX Gene Regulation date Sep 04, 2009
title Eed: A Novel Histone Trimethyllysine Binder Within The Eed-E Polycomb Complex
authors C.Xu, C.B.Bian, C.Bountra, J.Weigelt, C.H.Arrowsmith, A.M.Edwards A.Bochkarev, J.Min, Structural Genomics Consortium (Sgc)
compound source
Molecule: Polycomb Protein Eed
Chain: A
Fragment: Unp Residue: 40-441
Synonym: Heed, Wd Protein Associating With Integrin Cytopla 1, Wait-1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eed
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone Peptide
Chain: B
Engineered: Yes
Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor 0.164 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.877 85.298 91.329 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand M3L enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • histone methyltransferase ac...


    • Primary referenceBinding of different histone marks differentially regulates the activity and specificity of polycomb repressive complex 2 (PRC2)., Xu C, Bian C, Yang W, Galka M, Ouyang H, Chen C, Qiu W, Liu H, Jones AE, Mackenzie F, Pan P, Li SS, Wang H, Min J, Proc Natl Acad Sci U S A. 2010 Oct 25. PMID:20974918
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (3jpx.pdb1.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 3JPX
  • CSU: Contacts of Structural Units for 3JPX
  • Structure Factors (430 Kb)
  • Retrieve 3JPX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JPX from S2C, [Save to disk]
  • Re-refined 3jpx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3JPX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3JPX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3JPX, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jpx_A] [3jpx] [3jpx_B]
  • SWISS-PROT database: [O75530]
  • Domain organization of [EED_HUMAN] by SWISSPFAM
  • Domain found in 3JPX: [WD40 ] by SMART
    • Other resources with information on 3JPX
  • Community annotation for 3JPX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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