3JQH	Sugar Binding Protein	date	Sep 06, 2009
title	Structure Of The Neck Region Of The Glycan-Binding Receptor
authors	H.Feinberg, C.K.W.Tso, M.E.Taylor, K.Drickamer, W.I.Weis
compound		source
Molecule: C-Type Lectin Domain Family 4 Member M Chain: A Fragment: Unp Residues 101-264, Neck Domain Synonym: Cd209 Antigen-Like Protein 1, Dendritic Cell-Speci 3-Grabbing Non-Integrin 2, Dc-Sign2, Dc-Sign-Related Protei Signr, Liverlymph Node-Specific Icam-3-Grabbing Non-Integr Sign; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Clec4m, Cd209l, Cd209l1, Cd299 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21de3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pt5t
symmetry	Space Group: P 4 21 2	R_factor 0.194 R_Free 0.216
crystal cell	length a length b length c angle alpha angle beta angle gamma 34.170 34.170 36.720 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
Primary reference	Segmented Helical Structure of the Neck Region of the Glycan-Binding Receptor DC-SIGNR., Feinberg H, Tso CK, Taylor ME, Drickamer K, Weis WI, J Mol Biol. 2009 Oct 14. PMID:19835887

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (10 Kb) [Save to disk] Biological Unit Coordinates (3jqh.pdb1.gz) 42 Kb CSU: Contacts of Structural Units for 3JQH Structure Factors (9 Kb) Retrieve 3JQH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3JQH from S2C, [Save to disk]

View 3JQH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3JQH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3JQH, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3jqh_A] [3jqh] SWISS-PROT database: [Q9H2X3] Domain organization of [CLC4M_HUMAN] by SWISSPFAM

Other resources with information on 3JQH

Community annotation for 3JQH at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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