3JQH Sugar Binding Protein date Sep 06, 2009
title Structure Of The Neck Region Of The Glycan-Binding Receptor
authors H.Feinberg, C.K.W.Tso, M.E.Taylor, K.Drickamer, W.I.Weis
compound source
Molecule: C-Type Lectin Domain Family 4 Member M
Chain: A
Fragment: Unp Residues 101-264, Neck Domain
Synonym: Cd209 Antigen-Like Protein 1, Dendritic Cell-Speci 3-Grabbing Non-Integrin 2, Dc-Sign2, Dc-Sign-Related Protei Signr, Liverlymph Node-Specific Icam-3-Grabbing Non-Integr Sign;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Clec4m, Cd209l, Cd209l1, Cd299
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21de3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt5t
symmetry Space Group: P 4 21 2
R_factor 0.194 R_Free 0.216
length a length b length c angle alpha angle beta angle gamma
34.170 34.170 36.720 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
Primary referenceSegmented Helical Structure of the Neck Region of the Glycan-Binding Receptor DC-SIGNR., Feinberg H, Tso CK, Taylor ME, Drickamer K, Weis WI, J Mol Biol. 2009 Oct 14. PMID:19835887
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (11 Kb) [Save to disk]
  • Biological Unit Coordinates (3jqh.pdb1.gz) 50 Kb
  • CSU: Contacts of Structural Units for 3JQH
  • Structure Factors (9 Kb)
  • Retrieve 3JQH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JQH from S2C, [Save to disk]
  • View 3JQH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3JQH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3JQH, from MSDmotif at EBI
  • Fold representative 3jqh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jqh_A] [3jqh]
  • SWISS-PROT database: [Q9H2X3]
  • Domain organization of [CLC4M_HUMAN] by SWISSPFAM
  • Other resources with information on 3JQH
  • Community annotation for 3JQH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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