3JQO	Transport Protein	date	Sep 07, 2009
title	Crystal Structure Of The Outer Membrane Complex Of A Type Iv System
authors	V.Chandran, R.Fronzes, S.Duquerroy, N.Cronin, J.Navaza, G.Waksman
compound		source
Molecule: Traf Protein Chain: A, D, G, J, M, P, S, V, Y, b, e, h, k, n Fragment: Traf C-Terminal Domain, Unp Residues 160-386 Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 83333 Strain: K-12 Gene: Traf Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Star Expression_system_vector_type: Plasmid Expression_system_plasmid: Iba3c
Molecule: Trao Protein Chain: B, E, H, K, N, Q, T, W, Z, c, f, I, l, o Fragment: Trao C-Terminal Domain, Unp Residues 160-294 Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 83333 Strain: K-12 Gene: Trao Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Star Expression_system_vector_type: Plasmid Expression_system_plasmid: Iba3c
Molecule: Tran Protein Chain: C, F, I, L, O, R, U, X, a, d, g, j, m, p Fragment: Unp Residues 15-48 Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 83333 Strain: K-12 Gene: Tran Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Star Expression_system_vector_type: Plasmid Expression_system_plasmid: Iba3c
symmetry	Space Group: P 21 21 2	R_factor 0.227 R_Free 0.259
crystal cell	length a length b length c angle alpha angle beta angle gamma 202.400 211.630 203.440 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	LDA, MPD, MSE	enzyme
note	3JQO is a representative structure
Primary reference	Structure of the outer membrane complex of a type IV secretion system., Chandran V, Fronzes R, Duquerroy S, Cronin N, Navaza J, Waksman G, Nature. 2009 Dec 24;462(7276):1011-5. Epub 2009 Nov 29. PMID:19946264

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (786 Kb) [Save to disk] Biological Unit Coordinates (3jqo.pdb1.gz) 768 Kb LPC: Ligand-Protein Contacts for 3JQO CSU: Contacts of Structural Units for 3JQO Structure Factors (7226 Kb) Retrieve 3JQO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3JQO from S2C, [Save to disk] Re-refined 3jqo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3JQO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3JQO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3JQO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3jqo_D] [3jqo_I] [3jqo_R] [3jqo_J] [3jqo_K] [3jqo_p] [3jqo_N] [3jqo_U] [3jqo_M] [3jqo_G] [3jqo_e] [3jqo_C] [3jqo_a] [3jqo_c] [3jqo_k] [3jqo_P] [3jqo_S] [3jqo_Q] [3jqo_A] [3jqo_E] [3jqo_j] [3jqo_X] [3jqo_Z] [3jqo_F] [3jqo_o] [3jqo_n] [3jqo_B] [3jqo_V] [3jqo_H] [3jqo_l] [3jqo_b] [3jqo_Y] [3jqo_g] [3jqo_T] [3jqo_O] [3jqo] [3jqo_d] [3jqo_f] [3jqo_i] [3jqo_m] [3jqo_W] [3jqo_h] [3jqo_L] SWISS-PROT database: [Q46702] [Q46704] [Q46705] Belongs to the type iv (conjugal dna-protein transfer or virb) secretory pathway (ivsp) family according to TCDB. Domain organization of [Q46702_ECOLX] [Q46704_ECOLX] [Q46705_ECOLX] by SWISSPFAM

Other resources with information on 3JQO

Community annotation for 3JQO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---