3JQZ Transport Protein date Sep 08, 2009
title Crystal Structure Of Human Serum Albumin Complexed With Lidocaine
authors K.L.Hein, U.Kragh-Hansen, J.P.Morth, P.Nissen
compound source
Molecule: Serum Albumin
Chain: A, B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Alb, Gig20, Gig42, Pro0903, Pro1708, Pro2044, Pro2619, Pro2675, Unq696pro1341;
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
symmetry Space Group: I 41
R_factor 0.220 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
168.476 168.476 97.020 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.30 Å
ligand LQZ enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystallographic analysis reveals a unique lidocaine binding site on human serum albumin., Hein KL, Kragh-Hansen U, Morth JP, Jeppesen MD, Otzen D, Moller JV, Nissen P, J Struct Biol. 2010 Mar 27. PMID:20347991
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (411 Kb) [Save to disk]
  • Biological Unit Coordinates (3jqz.pdb1.gz) 404 Kb
  • LPC: Ligand-Protein Contacts for 3JQZ
  • CSU: Contacts of Structural Units for 3JQZ
  • Structure Factors (173 Kb)
  • Retrieve 3JQZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JQZ from S2C, [Save to disk]
  • Re-refined 3jqz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3JQZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3JQZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3JQZ, from MSDmotif at EBI
  • Fold representative 3jqz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jqz] [3jqz_A] [3jqz_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3JQZ: [ALBUMIN ] by SMART
  • Alignments of the sequence of 3JQZ with the sequences similar proteins can be viewed for 3JQZ's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3JQZ
  • Community annotation for 3JQZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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