3JRY Transport Protein date Sep 09, 2009
title Human Serum Albumin With Bound Sulfate
authors K.L.Hein, U.Kragh-Hansen, J.P.Morth, P.Nissen
compound source
Molecule: Serum Albumin
Chain: A, B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Alb, Gig20, Gig42, Pro0903, Pro1708, Pro2044, Pro2619 Pro2675, Unq696pro1341;
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
symmetry Space Group: P 1
R_factor 0.209 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.600 55.787 121.344 80.48 90.75 63.48
method X-Ray Diffractionresolution 2.30 Å
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystallographic analysis reveals a unique lidocaine binding site on human serum albumin., Hein KL, Kragh-Hansen U, Morth JP, Jeppesen MD, Otzen D, Moller JV, Nissen P, J Struct Biol. 2010 Mar 27. PMID:20347991
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (397 Kb) [Save to disk]
  • Biological Unit Coordinates (3jry.pdb1.gz) 196 Kb
  • Biological Unit Coordinates (3jry.pdb2.gz) 198 Kb
  • LPC: Ligand-Protein Contacts for 3JRY
  • CSU: Contacts of Structural Units for 3JRY
  • Structure Factors (410 Kb)
  • Retrieve 3JRY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JRY from S2C, [Save to disk]
  • Re-refined 3jry structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3JRY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3JRY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3JRY, from MSDmotif at EBI
  • Fold representative 3jry from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jry] [3jry_B] [3jry_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3JRY: [ALBUMIN ] by SMART
  • Other resources with information on 3JRY
  • Community annotation for 3JRY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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