3JRY Transport Protein date Sep 09, 2009
title Human Serum Albumin With Bound Sulfate
authors K.L.Hein, U.Kragh-Hansen, J.P.Morth, P.Nissen
compound source
Molecule: Serum Albumin
Chain: A, B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Alb, Gig20, Gig42, Pro0903, Pro1708, Pro2044, Pro2619 Pro2675, Unq696pro1341;
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
symmetry Space Group: P 1
R_factor 0.209 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.600 55.787 121.344 80.48 90.75 63.48
method X-Ray Diffractionresolution 2.30 Å
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystallographic analysis reveals a unique lidocaine binding site on human serum albumin., Hein KL, Kragh-Hansen U, Morth JP, Jeppesen MD, Otzen D, Moller JV, Nissen P, J Struct Biol. 2010 Mar 27. PMID:20347991
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (397 Kb) [Save to disk]
  • Biological Unit Coordinates (3jry.pdb1.gz) 196 Kb
  • Biological Unit Coordinates (3jry.pdb2.gz) 198 Kb
  • LPC: Ligand-Protein Contacts for 3JRY
  • CSU: Contacts of Structural Units for 3JRY
  • Structure Factors (410 Kb)
  • Retrieve 3JRY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JRY from S2C, [Save to disk]
  • Re-refined 3jry structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3JRY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3JRY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3JRY, from MSDmotif at EBI
  • Fold representative 3jry from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jry] [3jry_B] [3jry_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3JRY: [ALBUMIN ] by SMART
  • Alignments of the sequence of 3JRY with the sequences similar proteins can be viewed for 3JRY's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3JRY
  • Community annotation for 3JRY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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