3JSD	Hormone	date	Sep 10, 2009
title	Insulin'S Biosynthesis And Activity Have Opposing Structural Requirements: A New Factor In Neonatal Diabetes Mellitus
authors	M.A.Weiss, Z.L.Wan, E.J.Dodson, M.Liu, B.Xu, Q.X.Hua, M.Turkenburg J.Whittingham, S.H.Nakagawa, K.Huang, S.Q.Hu, W.H.Jia, S.H.Wang, J.Whittaker, P.Arvan, P.G.Katsoyannis, G.G.Dodson
compound		source
Molecule: Insulin A Chain Chain: A, C Fragment: Unp Residues 90-110 Engineered: Yes		Synthetic: Yes Other_details: Biosynthetic Sequence
Molecule: Insulin B Chain Chain: B, D Fragment: Unp Residues 25-54 Engineered: Yes		Synthetic: Yes Other_details: Biosynthetic Sequence
symmetry	Space Group: H 3	R_factor 0.206 R_Free 0.274
crystal cell	length a length b length c angle alpha angle beta angle gamma 80.843 80.843 38.842 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	CL, DAL, IPH, ZN	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B protease binding insulin receptor binding insulin-like growth factor r... hormone activity protein binding MAPK cascade negative regulation of acute... carbohydrate metabolic proce... glucose metabolic process energy reserve metabolic pro... regulation of transcription,... regulation of cellular amino... acute-phase response G-protein coupled receptor s... cell-cell signaling positive regulation of cell ... insulin receptor signaling p... positive regulation of phosp... glucose transport regulation of transmembrane ... positive regulation of cell ... positive regulation of cell ... endocrine pancreas developme... positive regulation of prote... activation of protein kinase... positive regulation of cellu... negative regulation of prote... regulation of protein locali... negative regulation of NAD(P... wound healing negative regulation of prote... glucose homeostasis negative regulation of apopt... positive regulation of MAPK ... cellular protein metabolic p... small molecule metabolic pro... positive regulation of nitri... positive regulation of cell ... negative regulation of gluco... positive regulation of glyco... positive regulation of DNA r... negative regulation of glyco... positive regulation of glyco... positive regulation of mitos... negative regulation of prote... negative regulation of vasod... positive regulation of vasod... negative regulation of fatty... positive regulation of gluco... positive regulation of insul... alpha-beta T cell activation... positive regulation of lipid... regulation of protein secret... negative regulation of prote... positive regulation of cytok... positive regulation of pepti... regulation of insulin secret... negative regulation of lipid... positive regulation of nitri... positive regulation of NF-ka... positive regulation of prote... fatty acid homeostasis negative regulation of respi... positive regulation of respi... positive regulation of pepti... positive regulation of brown... negative regulation of feedi... extracellular region extracellular space endoplasmic reticulum lumen Golgi lumen endosome lumen secretory granule lumen

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (22 Kb) [Save to disk] Biological Unit Coordinates (3jsd.pdb1.gz) 52 Kb LPC: Ligand-Protein Contacts for 3JSD CSU: Contacts of Structural Units for 3JSD Structure Factors (62 Kb) Retrieve 3JSD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3JSD from S2C, [Save to disk] Re-refined 3jsd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3JSD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 3JSD

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 3JSD, from MSDmotif at EBI Fold representative 3jsd from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3jsd_A] [3jsd_B] [3jsd_C] [3jsd_D] SWISS-PROT database: Domain organization of by SWISSPFAM Alignments of the sequence of 3JSD with the sequences similar proteins can be viewed for 3JSD's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.

Other resources with information on 3JSD

Community annotation for 3JSD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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