3JSD Hormone date Sep 10, 2009
title Insulin'S Biosynthesis And Activity Have Opposing Structural Requirements: A New Factor In Neonatal Diabetes Mellitus
authors M.A.Weiss, Z.L.Wan, E.J.Dodson, M.Liu, B.Xu, Q.X.Hua, M.Turkenburg J.Whittingham, S.H.Nakagawa, K.Huang, S.Q.Hu, W.H.Jia, S.H.Wang, J.Whittaker, P.Arvan, P.G.Katsoyannis, G.G.Dodson
compound source
Molecule: Insulin A Chain
Chain: A, C
Fragment: Unp Residues 90-110
Engineered: Yes
Synthetic: Yes
Other_details: Biosynthetic Sequence

Molecule: Insulin B Chain
Chain: B, D
Fragment: Unp Residues 25-54
Engineered: Yes

Synthetic: Yes
Other_details: Biosynthetic Sequence
symmetry Space Group: H 3
R_factor 0.206 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.843 80.843 38.842 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand CL, DAL, IPH, ZN enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (22 Kb) [Save to disk]
  • Biological Unit Coordinates (3jsd.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 3JSD
  • CSU: Contacts of Structural Units for 3JSD
  • Structure Factors (62 Kb)
  • Retrieve 3JSD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JSD from S2C, [Save to disk]
  • Re-refined 3jsd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3JSD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3JSD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3JSD, from MSDmotif at EBI
  • Fold representative 3jsd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jsd_D] [3jsd] [3jsd_A] [3jsd_C] [3jsd_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 3JSD with the sequences similar proteins can be viewed for 3JSD's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3JSD
  • Community annotation for 3JSD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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