3JTG Transcription date Sep 11, 2009
title Crystal Structure Of Mouse Elf3 C-Terminal Dna-Binding Domai Complex With Type II Tgf-Beta Receptor Promoter Dna
authors T.H.Tahirov, N.D.Babayeva, V.B.Agarkar, A.Rizzino
compound source
Molecule: Ets-Related Transcription Factor Elf-3
Chain: A
Fragment: Residues 289-391
Synonym: E74-Like Factor 3, Epithelium-Specific Ets Transcr Factor 1, Ese-1, Epithelium-Restricted Ets Protein Esx, Epi Restricted With Serine Box;
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Elf3, Ert, Esx, Jen
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) E.Coli
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28b

Molecule: Dna (5'-D(Gpapgpgpapgptptptpcpcptpgp 3');
Chain: B
Engineered: Yes
Other_details: Type II Tgf-Beta Receptor Promoter Dna

Synthetic: Yes
Other_details: Sequences Obtained From Type II Tgf-Beta Rec Promoter Dna;

Molecule: Dna (5'-D(Cpapapapcpapgpgpapapapcptp 3');
Chain: C
Engineered: Yes
Other_details: Type II Tgf-Beta Receptor Promoter Dna

Synthetic: Yes
Other_details: Sequences Obtained From Type II Tgf-Beta Rec Promoter Dna
symmetry Space Group: P 21 21 21
R_factor 0.234 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.660 52.005 99.783 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of mouse Elf3 C-terminal DNA-binding domain in complex with type II TGF-beta receptor promoter DNA., Agarkar VB, Babayeva ND, Wilder PJ, Rizzino A, Tahirov TH, J Mol Biol. 2010 Mar 19;397(1):278-89. Epub 2010 Jan 15. PMID:20079749
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (3jtg.pdb1.gz) 31 Kb
  • CSU: Contacts of Structural Units for 3JTG
  • Structure Factors (143 Kb)
  • Retrieve 3JTG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JTG from S2C, [Save to disk]
  • Re-refined 3jtg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3JTG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3JTG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3JTG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jtg] [3jtg_A] [3jtg_C] [3jtg_B]
  • SWISS-PROT database: [Q3UPW2]
  • Domain organization of [ELF3_MOUSE] by SWISSPFAM
  • Domain found in 3JTG: [ETS ] by SMART
  • Other resources with information on 3JTG
  • Community annotation for 3JTG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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