3JTI Hydrolase date Sep 12, 2009
title Crystal Structure Of The Complex Formed Between Phospholipas Beta-Amyloid Fragment, Lys-Gly-Ala-Ile-Ile-Gly-Leu-Met At 1 Resolution
authors N.Pandey, Z.Mirza, G.Vikram, N.Singh, A.Bhushan, P.Kaur, A.Sriniva S.Sharma, T.P.Singh
compound source
Molecule: Phospholipase A2 Isoform 3
Chain: A
Synonym: Phosphatidylcholine 2-Acylhydrolase
Organism_scientific: Naja Sagittifera
Organism_common: Andaman Cobra
Organism_taxid: 195058

Molecule: Octapeptide From Amyloid Beta A4 Protein
Chain: B
Fragment: Unp Residues 699-706
Synonym: P3(40)
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: This Peptide Was Chemically Synthesized.
symmetry Space Group: P 41
R_factor 0.171 R_Free 0.210
length a length b length c angle alpha angle beta angle gamma
42.762 42.762 65.765 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand CA enzyme Hydrolase E.C. BRENDA

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (3jti.pdb1.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 3JTI
  • CSU: Contacts of Structural Units for 3JTI
  • Structure Factors (75 Kb)
  • Retrieve 3JTI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JTI from S2C, [Save to disk]
  • Re-refined 3jti structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3JTI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3JTI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3JTI, from MSDmotif at EBI
  • Fold representative 3jti from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jti_B] [3jti_A] [3jti]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3JTI: [PA2c ] by SMART
  • Alignments of the sequence of 3JTI with the sequences similar proteins can be viewed for 3JTI's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3JTI
  • Community annotation for 3JTI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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