3JTI Hydrolase date Sep 12, 2009
title Crystal Structure Of The Complex Formed Between Phospholipas Beta-Amyloid Fragment, Lys-Gly-Ala-Ile-Ile-Gly-Leu-Met At 1 Resolution
authors N.Pandey, Z.Mirza, G.Vikram, N.Singh, A.Bhushan, P.Kaur, A.Sriniva S.Sharma, T.P.Singh
compound source
Molecule: Phospholipase A2 Isoform 3
Chain: A
Synonym: Phosphatidylcholine 2-Acylhydrolase
Ec: 3.1.1.4
Organism_scientific: Naja Sagittifera
Organism_common: Andaman Cobra
Organism_taxid: 195058

Molecule: Octapeptide From Amyloid Beta A4 Protein
Chain: B
Fragment: Unp Residues 699-706
Synonym: P3(40)
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: This Peptide Was Chemically Synthesized.
symmetry Space Group: P 41
R_factor 0.171 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.762 42.762 65.765 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand CA enzyme Hydrolase E.C.3.1.1.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (3jti.pdb1.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 3JTI
  • CSU: Contacts of Structural Units for 3JTI
  • Structure Factors (75 Kb)
  • Retrieve 3JTI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JTI from S2C, [Save to disk]
  • Re-refined 3jti structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3JTI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3JTI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3JTI, from MSDmotif at EBI
  • Fold representative 3jti from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jti_B] [3jti_A] [3jti]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3JTI: [PA2c ] by SMART
  • Other resources with information on 3JTI
  • Community annotation for 3JTI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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