3JU9 Sugar Binding Protein date Sep 14, 2009
title Crystal Structure Of A Lectin From Canavalia Brasiliensis Se Complexed With Alpha-Aminobutyric Acid
authors E.H.S.Bezerra, B.A.M.Rocha, C.S.Nagano, G.A.Bezerra, T.R.Moura, M.J.B.Bezerra, R.G.Benevides, E.S.Marinho, P.Delatorre, B.S.Cav
compound source
Molecule: Concanavalin-Br
Chain: A
Synonym: Con Br
Organism_scientific: Canavalia Brasiliensis
Organism_common: Brazilian Jack Bean
Organism_taxid: 61861
symmetry Space Group: I 2 2 2
R_factor 0.204 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.323 73.020 99.542 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand CA, CL, DBB, GOL, MN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural analysis of ConBr reveals molecular correlation between the carbohydrate recognition domain and endothelial NO synthase activation., Bezerra EH, Rocha BA, Nagano CS, Bezerra Gde A, Moura TR, Bezerra MJ, Benevides RG, Sampaio AH, Assreuy AM, Delatorre P, Cavada BS, Biochem Biophys Res Commun. 2011 May 20;408(4):566-70. Epub 2011 Apr 19. PMID:21530490
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (3ju9.pdb1.gz) 153 Kb
  • LPC: Ligand-Protein Contacts for 3JU9
  • CSU: Contacts of Structural Units for 3JU9
  • Structure Factors (225 Kb)
  • Retrieve 3JU9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JU9 from S2C, [Save to disk]
  • Re-refined 3ju9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3JU9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3JU9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3JU9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ju9_A] [3ju9]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3JU9
  • Community annotation for 3JU9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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