3JUE Protein Transport Endocytosis date Sep 15, 2009
title Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
authors X.Pang, K.Zhang, J.Ma, Q.Zhou, F.Sun
compound source
Molecule: Arfgap With Coiled-Coil, Ank Repeat And Ph Domain Containing Protein 1;
Chain: A, B
Fragment: Arfgap And Ank Repeat Domain, Residues 378-740
Synonym: Centaurin-Beta-1, Cnt-B1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Acap1, Centb1, Kiaa0050
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1
symmetry Space Group: P 21 21 2
R_factor 0.202 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.809 163.473 41.092 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand SO4, ZN enzyme
Primary referenceMechanistic insights into regulated cargo binding by ACAP1., Bai M, Pang X, Lou J, Zhou Q, Zhang K, Ma J, Li J, Sun F, Hsu V, J Biol Chem. 2012 May 29. PMID:22645133
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (171 Kb) [Save to disk]
  • Biological Unit Coordinates (3jue.pdb1.gz) 83 Kb
  • Biological Unit Coordinates (3jue.pdb2.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 3JUE
  • CSU: Contacts of Structural Units for 3JUE
  • Structure Factors (822 Kb)
  • Retrieve 3JUE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JUE from S2C, [Save to disk]
  • Re-refined 3jue structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3JUE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3JUE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3JUE, from MSDmotif at EBI
  • Fold representative 3jue from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jue] [3jue_A] [3jue_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3JUE: [ANK] [ArfGap ] by SMART
  • Other resources with information on 3JUE
  • Community annotation for 3JUE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science