3JUE Protein Transport Endocytosis date Sep 15, 2009
title Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
authors X.Pang, K.Zhang, J.Ma, Q.Zhou, F.Sun
compound source
Molecule: Arfgap With Coiled-Coil, Ank Repeat And Ph Domain Containing Protein 1;
Chain: A, B
Fragment: Arfgap And Ank Repeat Domain, Residues 378-740
Synonym: Centaurin-Beta-1, Cnt-B1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Acap1, Centb1, Kiaa0050
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1
symmetry Space Group: P 21 21 2
R_factor 0.202 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.809 163.473 41.092 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand SO4, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMechanistic insights into regulated cargo binding by ACAP1., Bai M, Pang X, Lou J, Zhou Q, Zhang K, Ma J, Li J, Sun F, Hsu V, J Biol Chem. 2012 May 29. PMID:22645133
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (171 Kb) [Save to disk]
  • Biological Unit Coordinates (3jue.pdb1.gz) 83 Kb
  • Biological Unit Coordinates (3jue.pdb2.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 3JUE
  • CSU: Contacts of Structural Units for 3JUE
  • Structure Factors (822 Kb)
  • Retrieve 3JUE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JUE from S2C, [Save to disk]
  • Re-refined 3jue structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3JUE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3JUE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3JUE, from MSDmotif at EBI
  • Fold representative 3jue from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jue] [3jue_A] [3jue_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3JUE: [ANK] [ArfGap ] by SMART
  • Other resources with information on 3JUE
  • Community annotation for 3JUE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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