3JVE Protein Binding date Sep 16, 2009
title Crystal Structure Of The Sixth Brct Domain Of Topbp1
authors C.C.Leung, E.Kellogg, D.Baker, J.N.M.Glover
compound source
Molecule: Dna Topoisomerase 2-Binding Protein 1
Chain: A
Fragment: C-Terminus (Brct) Domain
Synonym: Dna Topoisomerase II-Binding Protein 1, Dna Topois Iibeta-Binding Protein 1, Topbp1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Topbp1, Kiaa0259
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.158 R_Free 0.173
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.767 51.824 62.086 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.34 Å
Primary referenceInsights from the crystal structure of the sixth BRCT domain of topoisomerase IIbeta binding protein 1., Leung CC, Kellogg E, Kuhnert A, Hanel F, Baker D, Glover JN, Protein Sci. 2010 Jan;19(1):162-7. PMID:19937654
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (3jve.pdb1.gz) 38 Kb
  • CSU: Contacts of Structural Units for 3JVE
  • Structure Factors (373 Kb)
  • Retrieve 3JVE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JVE from S2C, [Save to disk]
  • Re-refined 3jve structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3JVE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3JVE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3JVE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jve] [3jve_A]
  • SWISS-PROT database: [Q92547]
  • Domain organization of [TOPB1_HUMAN] by SWISSPFAM
  • Domain found in 3JVE: [BRCT ] by SMART
    • Other resources with information on 3JVE
  • Community annotation for 3JVE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science