3JVF Signaling Protein Cytokine date Sep 16, 2009
title Crystal Structure Of An Interleukin-17 Receptor Complex
authors L.K.Ely, K.C.Garcia
compound source
Molecule: Interleukin-17f
Chain: A, B
Synonym: Il-17f, Interleukin-24, Il-24, Cytokine Ml-1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il17f, Il24
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Virus

Molecule: Interleukin-17 Receptor A
Chain: C
Fragment: Extracellular Domain
Synonym: Il-17 Receptor, Cdw217
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il17ra, Il17r
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell: Bacmam 293 Cells
Expression_system_vector_type: Virus
symmetry Space Group: P 41 21 2
R_factor 0.229 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
170.730 170.730 81.900 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.30 Å
ligand CA, MLY, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


C


Primary referenceStructural basis of receptor sharing by interleukin 17 cytokines., Ely LK, Fischer S, Garcia KC, Nat Immunol. 2009 Dec;10(12):1245-51. Epub 2009 Oct 18. PMID:19838198
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (3jvf.pdb1.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 3JVF
  • CSU: Contacts of Structural Units for 3JVF
  • Structure Factors (149 Kb)
  • Retrieve 3JVF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JVF from S2C, [Save to disk]
  • Re-refined 3jvf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3JVF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3JVF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3JVF, from MSDmotif at EBI
  • Fold representative 3jvf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jvf_C] [3jvf_A] [3jvf_B] [3jvf]
  • SWISS-PROT database: [Q96F46] [Q96PD4]
  • Domain organization of [I17RA_HUMAN] [IL17F_HUMAN] by SWISSPFAM
  • Other resources with information on 3JVF
  • Community annotation for 3JVF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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