3JWD	Viral Protein	date	Sep 18, 2009
title	Structure Of Hiv-1 Gp120 With Gp41-Interactive Region: Layer Architecture And Basis Of Conformational Mobility
authors	M.Pancera, S.Majeed, Y.A.Ban, L.Chen, C.C.Huang, L.Kong, Y.D.Kwon, J.Stuckey, T.Zhou, J.E.Robinson, W.R.Schief, J.Sodroski, R.Wyatt P.D.Kwong
compound		source
Molecule: Hiv-1 Gp120 Envelope Glycoprotein Chain: A, B Engineered: Yes		Organism_scientific: Human Immunodeficiency Virus 1 Organism_taxid: 11676 Strain: Hxbc2 Expression_system: Drosophila Melanogaster Expression_system_common: Fruit Fly Expression_system_taxid: 7227 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmt
Molecule: T-Cell Surface Glycoprotein Cd4 Chain: C, D Synonym: T-Cell Surface Antigen T4leu-3 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cd4 Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029
Molecule: Fab 48d Light Chain Chain: L, O Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Unidentified Herpesvirus Expression_system_taxid: 39059 Expression_system_cell: Immortalized B-Cell Clone Fused Wit Murine B-Cell Fusion Partner;
Molecule: Fab 48d Heavy Chain Chain: H, P Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Unidentified Herpesvirus Expression_system_taxid: 39059 Expression_system_cell: Immortalized B-Cell Clone Fused Wit Murine B-Cell Fusion Partner
symmetry	Space Group: P 21 21 21	R_factor 0.201 R_Free 0.275
crystal cell	length a length b length c angle alpha angle beta angle gamma 83.112 172.954 193.144 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.61 Å
ligand	GOL, NAG, YCM	enzyme
Gene Ontology	Chain Function Process Component A, B D, C
Primary reference	Structure of HIV-1 gp120 with gp41-interactive region reveals layered envelope architecture and basis of conformational mobility., Pancera M, Majeed S, Ban YE, Chen L, Huang CC, Kong L, Kwon YD, Stuckey J, Zhou T, Robinson JE, Schief WR, Sodroski J, Wyatt R, Kwong PD, Proc Natl Acad Sci U S A. 2009 Dec 28. PMID:20080564

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (669 Kb) [Save to disk] Biological Unit Coordinates (3jwd.pdb1.gz) 334 Kb Biological Unit Coordinates (3jwd.pdb2.gz) 333 Kb LPC: Ligand-Protein Contacts for 3JWD CSU: Contacts of Structural Units for 3JWD Structure Factors (473 Kb) Retrieve 3JWD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3JWD from S2C, [Save to disk] Re-refined 3jwd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3JWD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3JWD

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3JWD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3jwd_D] [3jwd] [3jwd_C] [3jwd_H] [3jwd_P] [3jwd_A] [3jwd_L] [3jwd_B] [3jwd_O] SWISS-PROT database: [P01730] Domain organization of [CD4_HUMAN] by SWISSPFAM Domains found in 3JWD: [IG_like] [IGv ] by SMART

Other resources with information on 3JWD

Community annotation for 3JWD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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