3JWQ Hydrolase date Sep 18, 2009
title Crystal Structure Of Chimeric Pde5pde6 Catalytic Domain Com With Sildenafil
authors B.Barren, L.Gakhar, H.Muradov, K.K.Boyd, S.Ramaswamy, N.O.Artemye
compound source
Molecule: Cgmp-Specific 3',5'-Cyclic Phosphodiesterase Cata Domain, Cone Cgmp-Specific 3',5'-Cyclic Phosphodiesterase S Alpha Chimera;
Chain: A, B, C, D
Synonym: Cgmp-Binding Cgmp-Specific Phosphodiesterase, Cgb- Phosphodiesterase 6c;
Ec: 3.1.4.35
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pde5a, Pde5, Pde6c, Pdea2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.223 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.732 109.825 199.668 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.87 Å
ligand MG, VIA, ZN BindingDB enzyme Hydrolase E.C.3.1.4.35 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural basis of phosphodiesterase 6 inhibition by the C-terminal region of the gamma-subunit., Barren B, Gakhar L, Muradov H, Boyd KK, Ramaswamy S, Artemyev NO, EMBO J. 2009 Oct 1. PMID:19798052
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (218 Kb) [Save to disk]
  • Biological Unit Coordinates (3jwq.pdb1.gz) 55 Kb
  • Biological Unit Coordinates (3jwq.pdb2.gz) 55 Kb
  • Biological Unit Coordinates (3jwq.pdb3.gz) 56 Kb
  • Biological Unit Coordinates (3jwq.pdb4.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 3JWQ
  • CSU: Contacts of Structural Units for 3JWQ
  • Structure Factors (293 Kb)
  • Retrieve 3JWQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JWQ from S2C, [Save to disk]
  • Re-refined 3jwq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3JWQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3JWQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3JWQ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jwq] [3jwq_A] [3jwq_D] [3jwq_B] [3jwq_C]
  • SWISS-PROT database: [O76074]
  • Domain organization of [PDE5A_HUMAN] by SWISSPFAM
  • Domain found in 3JWQ: [HDc ] by SMART
    • Other resources with information on 3JWQ
  • Community annotation for 3JWQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science